Variant report

Variant	rs2042098
Chromosome Location	chr12:45496855-45496856
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11182840	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12304662	1.00[ASN][1000 genomes]
rs12306609	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12311766	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12578220	0.80[JPT][hapmap]
rs12581545	0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12581554	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17095441	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs17095452	0.92[ASN][1000 genomes]
rs1904052	0.92[ASN][1000 genomes]
rs2731032	0.84[EUR][1000 genomes]
rs56739303	0.83[EUR][1000 genomes]
rs59774135	0.97[ASN][1000 genomes]
rs74080216	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74080767	0.83[EUR][1000 genomes]
rs74083403	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351644	chr12:45345597-45529449	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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