Variant report

Variant	rs10492285
Chromosome Location	chr12:45577637-45577638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45562910..45564711-chr12:45576729..45579508,2	K562	blood:
2	chr12:45577100..45578744-chr12:45658727..45661444,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1025088	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap]
rs10736024	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs10785564	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs11182798	1.00[CEU][hapmap]
rs11182806	1.00[CEU][hapmap]
rs11182807	1.00[CEU][hapmap]
rs11182809	1.00[CEU][hapmap]
rs11182840	1.00[EUR][1000 genomes]
rs11182890	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11182891	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11182892	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11182918	0.82[ASW][hapmap]
rs11182980	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[CHD][hapmap]
rs12231753	0.82[ASW][hapmap]
rs12304106	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12304662	1.00[EUR][1000 genomes]
rs12311766	1.00[EUR][1000 genomes]
rs12578188	1.00[CEU][hapmap]
rs12578220	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12578314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12578982	0.80[ASN][1000 genomes]
rs12579080	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs12580208	0.80[ASN][1000 genomes]
rs12581545	1.00[EUR][1000 genomes]
rs12581554	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12581841	0.80[ASN][1000 genomes]
rs12582369	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs17095441	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17095452	1.00[EUR][1000 genomes]
rs17095474	1.00[EUR][1000 genomes]
rs17095524	0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs17095527	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17095584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17095688	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap]
rs17095706	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap]
rs17095713	1.00[CEU][hapmap]
rs17095716	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs17095721	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs17095722	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap]
rs17095723	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs17095736	1.00[CEU][hapmap]
rs17095784	1.00[CEU][hapmap]
rs1896027	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs1904052	1.00[EUR][1000 genomes]
rs2037856	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs2037857	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs3759079	0.80[ASN][1000 genomes]
rs41331147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4768087	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs4768600	1.00[CEU][hapmap]
rs4768606	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap]
rs59774135	1.00[EUR][1000 genomes]
rs6582542	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs7135029	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs7136281	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap]
rs7304389	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap]
rs7304749	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap]
rs7315817	1.00[CEU][hapmap]
rs74083403	1.00[EUR][1000 genomes]
rs7954026	0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7960346	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7968450	1.00[CEU][hapmap]
rs7969139	0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7971900	1.00[ASW][hapmap];0.83[LWK][hapmap]
rs7974579	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7974800	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7975566	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45565400-45586400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:45565600-45585000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:45570000-45593200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:45571000-45594600	Weak transcription	Pancreas	Pancrea
5	chr12:45571600-45586000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:45573200-45586000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr12:45573200-45587200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr12:45573400-45583200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:45573400-45585000	Weak transcription	NHEK	skin
10	chr12:45573400-45594600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:45573600-45593600	Weak transcription	Fetal Thymus	thymus
12	chr12:45574000-45578000	Weak transcription	Primary B cells from cord blood	blood
13	chr12:45574000-45586200	Weak transcription	Dnd41	blood
14	chr12:45574200-45578000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr12:45574200-45580000	Weak transcription	Primary T cells from cord blood	blood
16	chr12:45574200-45584200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr12:45574200-45586200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr12:45574600-45586000	Weak transcription	Fetal Intestine Small	intestine
19	chr12:45575400-45582200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr12:45575600-45584400	Weak transcription	Left Ventricle	heart
21	chr12:45576600-45581800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr12:45576600-45585800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr12:45577000-45578000	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr12:45577400-45579200	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr12:45577600-45584400	Weak transcription	A549	lung
26	chr12:45577600-45584600	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links