Variant report

Variant	rs17095474
Chromosome Location	chr12:45518178-45518179
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1025088	1.00[CEU][hapmap]
rs10492285	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10736024	1.00[CEU][hapmap]
rs10785564	1.00[CEU][hapmap]
rs11182798	1.00[CEU][hapmap]
rs11182806	1.00[CEU][hapmap]
rs11182807	1.00[CEU][hapmap]
rs11182809	1.00[CEU][hapmap]
rs11182840	1.00[EUR][1000 genomes]
rs11182980	1.00[CEU][hapmap]
rs12304662	1.00[EUR][1000 genomes]
rs12311766	1.00[EUR][1000 genomes]
rs12578220	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12578314	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs12578982	1.00[AMR][1000 genomes]
rs12579006	1.00[AMR][1000 genomes]
rs12580208	1.00[AMR][1000 genomes]
rs12580562	1.00[AMR][1000 genomes]
rs12581545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12581554	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12581841	1.00[AMR][1000 genomes]
rs12581880	1.00[AMR][1000 genomes]
rs12582025	1.00[AMR][1000 genomes]
rs12582369	1.00[CEU][hapmap]
rs17095247	1.00[CEU][hapmap]
rs17095441	1.00[CEU][hapmap]
rs17095452	1.00[EUR][1000 genomes]
rs17095527	1.00[EUR][1000 genomes]
rs17095584	1.00[CEU][hapmap]
rs17095688	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17095706	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17095713	1.00[CEU][hapmap]
rs17095716	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17095721	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17095722	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs1896027	1.00[CEU][hapmap]
rs1904052	1.00[EUR][1000 genomes]
rs2037856	1.00[CEU][hapmap]
rs2037857	1.00[CEU][hapmap]
rs3759079	1.00[AMR][1000 genomes]
rs41331147	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs4768087	1.00[CEU][hapmap]
rs4768600	1.00[CEU][hapmap]
rs4768606	1.00[CEU][hapmap]
rs59774135	1.00[EUR][1000 genomes]
rs60216384	1.00[AMR][1000 genomes]
rs6582542	1.00[CEU][hapmap]
rs7135029	1.00[CEU][hapmap]
rs7136281	1.00[CEU][hapmap]
rs7304389	1.00[CEU][hapmap]
rs7304749	1.00[CEU][hapmap]
rs7315817	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs74083403	1.00[EUR][1000 genomes]
rs7486228	1.00[AMR][1000 genomes]
rs7968450	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351644	chr12:45345597-45529449	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45515400-45518600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:45516400-45518400	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links