Variant report
| Variant | rs12581880 |
|---|---|
| Chromosome Location | chr12:45479379-45479380 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs10880727 | 1.00[EUR][1000 genomes] |
| rs10880728 | 1.00[EUR][1000 genomes] |
| rs10880729 | 1.00[EUR][1000 genomes] |
| rs10880731 | 1.00[EUR][1000 genomes] |
| rs11182770 | 1.00[EUR][1000 genomes] |
| rs11182771 | 1.00[EUR][1000 genomes] |
| rs11182772 | 1.00[EUR][1000 genomes] |
| rs11182785 | 1.00[EUR][1000 genomes] |
| rs11182789 | 1.00[EUR][1000 genomes] |
| rs11182790 | 1.00[EUR][1000 genomes] |
| rs11182791 | 1.00[EUR][1000 genomes] |
| rs11182792 | 1.00[EUR][1000 genomes] |
| rs11182793 | 1.00[EUR][1000 genomes] |
| rs11182796 | 1.00[EUR][1000 genomes] |
| rs11182798 | 1.00[EUR][1000 genomes] |
| rs11182806 | 1.00[EUR][1000 genomes] |
| rs11182807 | 1.00[EUR][1000 genomes] |
| rs11182808 | 1.00[EUR][1000 genomes] |
| rs11182809 | 1.00[EUR][1000 genomes] |
| rs11182812 | 1.00[EUR][1000 genomes] |
| rs12578220 | 1.00[AMR][1000 genomes] |
| rs12578314 | 1.00[AMR][1000 genomes] |
| rs12578982 | 1.00[AMR][1000 genomes] |
| rs12579006 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12580208 | 1.00[AMR][1000 genomes] |
| rs12580562 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12581545 | 1.00[AMR][1000 genomes] |
| rs12581653 | 1.00[EUR][1000 genomes] |
| rs12581841 | 1.00[AMR][1000 genomes] |
| rs12581852 | 1.00[EUR][1000 genomes] |
| rs12582602 | 1.00[EUR][1000 genomes] |
| rs12829945 | 1.00[EUR][1000 genomes] |
| rs17095474 | 1.00[AMR][1000 genomes] |
| rs3759079 | 1.00[AMR][1000 genomes] |
| rs3803172 | 1.00[EUR][1000 genomes] |
| rs3803174 | 1.00[EUR][1000 genomes] |
| rs3803175 | 1.00[EUR][1000 genomes] |
| rs41331147 | 1.00[AMR][1000 genomes] |
| rs57726055 | 1.00[EUR][1000 genomes] |
| rs60216384 | 1.00[AMR][1000 genomes] |
| rs7300104 | 1.00[EUR][1000 genomes] |
| rs7315817 | 1.00[EUR][1000 genomes] |
| rs7486228 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3351644 | chr12:45345597-45529449 | Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:45471400-45481800 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
