Variant report

Variant	rs57726055
Chromosome Location	chr12:45362271-45362272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10506259	1.00[AMR][1000 genomes]
rs10880694	1.00[AMR][1000 genomes]
rs10880698	1.00[AMR][1000 genomes]
rs10880699	1.00[AMR][1000 genomes]
rs10880727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10880728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10880729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10880731	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11182700	0.89[AMR][1000 genomes]
rs11182704	1.00[AMR][1000 genomes]
rs11182709	1.00[AMR][1000 genomes]
rs11182712	1.00[AMR][1000 genomes]
rs11182713	1.00[AMR][1000 genomes]
rs11182714	1.00[AMR][1000 genomes]
rs11182717	1.00[AMR][1000 genomes]
rs11182722	1.00[AMR][1000 genomes]
rs11182724	1.00[AMR][1000 genomes]
rs11182725	1.00[AMR][1000 genomes]
rs11182730	1.00[AMR][1000 genomes]
rs11182770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11182771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11182785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11182789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11182790	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11182791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11182792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11182793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11182796	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11182798	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11182806	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11182807	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11182808	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11182809	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11182812	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12227311	1.00[AMR][1000 genomes]
rs12227622	0.89[AMR][1000 genomes]
rs12228073	1.00[AMR][1000 genomes]
rs12228476	1.00[AMR][1000 genomes]
rs12579006	1.00[EUR][1000 genomes]
rs12580287	1.00[AMR][1000 genomes]
rs12580562	1.00[EUR][1000 genomes]
rs12581653	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12581852	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12581880	1.00[EUR][1000 genomes]
rs12581903	1.00[AMR][1000 genomes]
rs12582602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12829945	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17095196	1.00[AMR][1000 genomes]
rs17095198	1.00[AMR][1000 genomes]
rs34275629	0.87[AFR][1000 genomes]
rs3803172	1.00[EUR][1000 genomes]
rs3803174	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3803175	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59646766	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7300104	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7315817	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899049	chr12:45299202-45376053	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv899050	chr12:45299202-45400614	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv899051	chr12:45307633-45376053	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv527565	chr12:45319767-45365812	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv3407092	chr12:45342734-45368068	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3351644	chr12:45345597-45529449	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1045857	chr12:45351172-45468784	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv541485	chr12:45351172-45468784	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv469365	chr12:45353367-45388817	Enhancers Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv558751	chr12:45353367-45388817	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv469366	chr12:45357804-45386398	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv558752	chr12:45357804-45386398	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45361800-45364200	Enhancers	Dnd41	blood
2	chr12:45362000-45363200	Enhancers	Primary hematopoietic stem cells	blood
3	chr12:45362000-45364200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr12:45362000-45364200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:45362200-45364000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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