Variant report

Variant	rs59646766
Chromosome Location	chr12:45337104-45337105
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45336563..45338424-chr12:45340632..45342622,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10506259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10880694	1.00[AMR][1000 genomes]
rs10880698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10880699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10880727	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10880728	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10880729	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10880731	0.81[ASN][1000 genomes]
rs11182700	0.89[AMR][1000 genomes]
rs11182704	1.00[AMR][1000 genomes]
rs11182709	1.00[AMR][1000 genomes]
rs11182712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11182713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11182714	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11182717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11182722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11182723	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11182724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11182725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11182726	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11182729	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11182730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11182770	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11182771	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11182772	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11182785	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11182789	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11182790	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11182791	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11182792	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11182793	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11182796	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11182798	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11182806	0.81[ASN][1000 genomes]
rs11182807	0.81[ASN][1000 genomes]
rs11182808	0.81[ASN][1000 genomes]
rs11182809	0.81[ASN][1000 genomes]
rs11182812	0.81[ASN][1000 genomes]
rs12227311	1.00[AMR][1000 genomes]
rs12227622	0.89[AMR][1000 genomes]
rs12228073	1.00[AMR][1000 genomes]
rs12228476	1.00[AMR][1000 genomes]
rs12580287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12581653	0.80[ASN][1000 genomes]
rs12581852	0.81[ASN][1000 genomes]
rs12581903	1.00[AMR][1000 genomes]
rs12582602	1.00[AMR][1000 genomes]
rs12829945	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17095196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17095198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2658949	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2703049	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2703052	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2703056	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2703057	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2710418	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3803174	0.80[ASN][1000 genomes]
rs3803175	0.80[ASN][1000 genomes]
rs57726055	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61438749	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71459276	0.88[ASN][1000 genomes]
rs7300104	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7315817	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899049	chr12:45299202-45376053	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv899050	chr12:45299202-45400614	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv899051	chr12:45307633-45376053	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv527565	chr12:45319767-45365812	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45336400-45337600	Enhancers	Fetal Intestine Large	intestine
2	chr12:45336600-45337200	Enhancers	Liver	Liver
3	chr12:45337000-45342400	Weak transcription	HepG2	liver

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