Variant report

Variant	rs7971900
Chromosome Location	chr12:45562779-45562780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45562389..45565412-chr12:46122245..46125333,3	MCF-7	breast:
2	chr12:45560836..45563116-chr12:45564876..45566648,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189079	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10492285	1.00[ASW][hapmap];0.83[LWK][hapmap]
rs10785557	0.80[AMR][1000 genomes]
rs10880755	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10880756	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10880757	0.89[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs10880758	0.89[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs10880761	0.86[JPT][hapmap]
rs10880762	0.85[JPT][hapmap];0.80[AMR][1000 genomes]
rs10880764	0.85[JPT][hapmap];0.80[MEX][hapmap]
rs11182890	0.85[AFR][1000 genomes]
rs11182891	0.85[AFR][1000 genomes]
rs11182892	0.84[AFR][1000 genomes]
rs11182898	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs11182899	0.90[EUR][1000 genomes]
rs11182905	0.90[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs11182908	0.87[EUR][1000 genomes]
rs11182918	0.83[ASW][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];0.80[AMR][1000 genomes]
rs11182938	0.80[AMR][1000 genomes]
rs11182949	0.86[JPT][hapmap]
rs12230322	0.86[JPT][hapmap];0.90[MEX][hapmap];0.80[AMR][1000 genomes]
rs12231753	0.83[ASW][hapmap];0.90[CEU][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12304106	0.81[AFR][1000 genomes]
rs12320168	0.86[JPT][hapmap]
rs12815577	0.86[JPT][hapmap]
rs17095524	0.84[AFR][1000 genomes]
rs1896024	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1903934	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2052603	0.86[JPT][hapmap];0.90[MEX][hapmap]
rs2408184	0.86[JPT][hapmap]
rs35660715	0.80[AMR][1000 genomes]
rs3759080	0.80[AMR][1000 genomes]
rs4768085	0.86[JPT][hapmap]
rs61923804	0.90[EUR][1000 genomes]
rs7135988	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7304481	0.86[JPT][hapmap]
rs7954026	0.84[AFR][1000 genomes]
rs7954282	0.89[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs7956033	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7960346	0.85[AFR][1000 genomes]
rs7963038	0.80[AMR][1000 genomes]
rs7969139	0.84[AFR][1000 genomes]
rs7974579	0.85[AFR][1000 genomes]
rs7974800	0.85[AFR][1000 genomes]
rs7975566	0.85[AFR][1000 genomes]
rs929903	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45559800-45562800	Weak transcription	Left Ventricle	heart
2	chr12:45559800-45569400	Weak transcription	Right Ventricle	heart
3	chr12:45560000-45569000	Weak transcription	Adipose Nuclei	Adipose
4	chr12:45560200-45569200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr12:45560200-45570400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr12:45560600-45569400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr12:45560800-45568000	Weak transcription	Fetal Muscle Leg	muscle
8	chr12:45560800-45571200	Weak transcription	Psoas Muscle	Psoas
9	chr12:45561000-45569600	Weak transcription	Aorta	Aorta
10	chr12:45561200-45562800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr12:45561200-45569000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr12:45561600-45571200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr12:45562600-45563000	Enhancers	Thymus	Thymus
14	chr12:45562600-45563000	Enhancers	HSMMtube	muscle
15	chr12:45562600-45564200	Enhancers	Fetal Thymus	thymus

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