Variant report

Variant	rs10880757
Chromosome Location	chr12:45580639-45580640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45580210..45582338-chr12:45589602..45591590,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10459293	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs10459294	0.85[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10459295	0.87[JPT][hapmap]
rs10492284	0.87[JPT][hapmap]
rs10785556	0.89[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.86[GIH][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10880755	0.89[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs10880756	0.90[EUR][1000 genomes]
rs10880758	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10880761	0.84[AMR][1000 genomes]
rs10880765	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs10880766	0.87[JPT][hapmap]
rs10880768	0.87[JPT][hapmap]
rs11182898	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11182899	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11182903	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11182904	0.89[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.86[GIH][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11182905	0.80[CEU][hapmap]
rs11182912	0.86[ASN][1000 genomes]
rs11182916	0.90[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.84[ASN][1000 genomes]
rs11182917	0.84[ASN][1000 genomes]
rs11182919	0.90[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11182921	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11182923	0.82[ASN][1000 genomes]
rs11182927	0.85[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.85[MEX][hapmap];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11182931	0.85[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.84[ASN][1000 genomes]
rs11182935	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11182940	0.89[AMR][1000 genomes]
rs11182943	0.80[ASN][1000 genomes]
rs11182947	0.81[ASN][1000 genomes]
rs11182954	0.87[JPT][hapmap]
rs11182955	0.87[JPT][hapmap]
rs11182957	0.87[JPT][hapmap]
rs11182961	0.87[JPT][hapmap]
rs11182965	0.87[JPT][hapmap];0.82[MEX][hapmap]
rs11182981	0.87[JPT][hapmap]
rs11561532	0.83[ASN][1000 genomes]
rs11610233	0.89[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11611509	0.89[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11612203	0.84[ASN][1000 genomes]
rs11612233	0.90[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.85[MEX][hapmap];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11614082	0.87[JPT][hapmap]
rs11614089	0.81[JPT][hapmap]
rs11615850	0.84[ASN][1000 genomes]
rs12226944	0.82[ASN][1000 genomes]
rs12227678	0.87[JPT][hapmap]
rs12228733	0.89[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12231753	0.80[CEU][hapmap]
rs12299174	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12320437	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12322087	0.89[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12815115	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12822746	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12828052	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17095551	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17095557	0.85[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.84[ASN][1000 genomes]
rs1896024	0.88[EUR][1000 genomes]
rs1903934	0.86[EUR][1000 genomes]
rs2408185	0.90[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34024171	0.84[ASN][1000 genomes]
rs35054776	0.85[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.84[ASN][1000 genomes]
rs35588430	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3759077	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3759081	0.84[ASN][1000 genomes]
rs3759082	0.90[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3782131	0.90[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.85[MEX][hapmap];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57797434	0.85[ASN][1000 genomes]
rs61923804	1.00[EUR][1000 genomes]
rs61923810	0.85[ASN][1000 genomes]
rs61923825	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61923830	0.84[ASN][1000 genomes]
rs7135988	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs7138983	0.80[AMR][1000 genomes]
rs7954282	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.87[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7956033	0.90[EUR][1000 genomes]
rs7971900	0.89[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs929903	0.90[EUR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45565400-45586400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:45565600-45585000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:45570000-45593200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:45571000-45594600	Weak transcription	Pancreas	Pancrea
5	chr12:45571600-45586000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:45573200-45586000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr12:45573200-45587200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr12:45573400-45583200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:45573400-45585000	Weak transcription	NHEK	skin
10	chr12:45573400-45594600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:45573600-45593600	Weak transcription	Fetal Thymus	thymus
12	chr12:45574000-45586200	Weak transcription	Dnd41	blood
13	chr12:45574200-45584200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr12:45574200-45586200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr12:45574600-45586000	Weak transcription	Fetal Intestine Small	intestine
16	chr12:45575400-45582200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr12:45575600-45584400	Weak transcription	Left Ventricle	heart
18	chr12:45576600-45581800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr12:45576600-45585800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr12:45577600-45584400	Weak transcription	A549	lung
21	chr12:45577600-45584600	Weak transcription	Fetal Stomach	stomach
22	chr12:45578600-45583200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr12:45578600-45585000	Weak transcription	Primary B cells from peripheral blood	blood
24	chr12:45578600-45585800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr12:45578600-45585800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr12:45578600-45586000	Weak transcription	K562	blood
27	chr12:45578600-45594000	Weak transcription	Thymus	Thymus
28	chr12:45578600-45594600	Weak transcription	Psoas Muscle	Psoas
29	chr12:45579200-45582800	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr12:45579200-45583000	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr12:45579400-45583000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr12:45579400-45599200	Weak transcription	Primary B cells from cord blood	blood
33	chr12:45579800-45586000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr12:45580000-45582400	Strong transcription	Primary T cells from cord blood	blood
35	chr12:45580000-45585800	Weak transcription	Fetal Intestine Large	intestine
36	chr12:45580200-45593800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr12:45580600-45580800	Enhancers	GM12878-XiMat	blood
38	chr12:45580600-45581800	Enhancers	Fetal Heart	heart

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