Variant report

Variant	rs1903934
Chromosome Location	chr12:45561324-45561325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45560836..45563116-chr12:45564876..45566648,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10437984	0.81[AMR][1000 genomes]
rs10880755	0.94[ASW][hapmap];0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10880756	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10880757	0.80[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs10880758	0.80[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs10880761	0.86[JPT][hapmap]
rs10880762	0.85[JPT][hapmap]
rs10880764	0.89[ASW][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];0.82[AMR][1000 genomes]
rs11182898	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs11182899	0.86[EUR][1000 genomes]
rs11182905	0.81[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11182908	0.83[EUR][1000 genomes]
rs11182918	0.86[JPT][hapmap];0.81[MEX][hapmap]
rs11182939	0.81[AMR][1000 genomes]
rs11182949	0.86[JPT][hapmap]
rs12230322	0.86[JPT][hapmap];0.81[MEX][hapmap]
rs12231753	0.81[CEU][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.81[MEX][hapmap];0.83[EUR][1000 genomes]
rs12320168	0.86[JPT][hapmap]
rs12815577	0.86[JPT][hapmap]
rs1896024	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2052603	0.86[JPT][hapmap];0.81[MEX][hapmap]
rs2408184	0.86[JPT][hapmap]
rs4768085	0.86[JPT][hapmap]
rs61923804	0.86[EUR][1000 genomes]
rs7135988	0.90[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7304481	0.82[ASW][hapmap];0.86[JPT][hapmap]
rs7954282	0.80[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs7956033	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7963057	0.81[AMR][1000 genomes]
rs7971900	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs929903	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45559600-45561600	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr12:45559800-45562800	Weak transcription	Left Ventricle	heart
3	chr12:45559800-45569400	Weak transcription	Right Ventricle	heart
4	chr12:45560000-45569000	Weak transcription	Adipose Nuclei	Adipose
5	chr12:45560200-45569200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr12:45560200-45570400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr12:45560600-45569400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr12:45560800-45562600	Weak transcription	HSMMtube	muscle
9	chr12:45560800-45568000	Weak transcription	Fetal Muscle Leg	muscle
10	chr12:45560800-45571200	Weak transcription	Psoas Muscle	Psoas
11	chr12:45561000-45569600	Weak transcription	Aorta	Aorta
12	chr12:45561200-45562800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr12:45561200-45569000	Weak transcription	Stomach Smooth Muscle	stomach

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