Variant report

Variant	rs10880755
Chromosome Location	chr12:45572174-45572175
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45571181..45572912-chr12:45622978..45625971,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10437984	0.89[AMR][1000 genomes]
rs10785557	0.86[AMR][1000 genomes]
rs10880756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10880757	0.89[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs10880758	0.89[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs10880761	0.86[JPT][hapmap]
rs10880762	0.85[JPT][hapmap];0.86[AMR][1000 genomes]
rs10880764	0.94[ASW][hapmap];0.85[JPT][hapmap];0.80[MEX][hapmap];0.84[AMR][1000 genomes]
rs11182898	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs11182899	0.90[EUR][1000 genomes]
rs11182905	0.90[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11182908	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11182918	0.87[GIH][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];0.86[AMR][1000 genomes]
rs11182938	0.86[AMR][1000 genomes]
rs11182939	0.89[AMR][1000 genomes]
rs11182949	0.86[JPT][hapmap]
rs12230322	0.83[CHB][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];0.86[AMR][1000 genomes]
rs12231753	0.90[CEU][hapmap];0.83[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12320168	0.86[JPT][hapmap]
rs12815577	0.86[JPT][hapmap]
rs1896024	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1903934	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2052603	0.86[JPT][hapmap];0.90[MEX][hapmap]
rs2408184	0.86[JPT][hapmap]
rs35660715	0.86[AMR][1000 genomes]
rs3759080	0.86[AMR][1000 genomes]
rs4768085	0.88[ASW][hapmap];0.86[JPT][hapmap]
rs58444879	0.84[AMR][1000 genomes]
rs61923804	0.90[EUR][1000 genomes]
rs7135988	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7304481	0.87[ASW][hapmap];0.86[JPT][hapmap]
rs7954282	0.89[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs7956033	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7963038	0.86[AMR][1000 genomes]
rs7963057	0.89[AMR][1000 genomes]
rs7971900	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs929903	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45565400-45586400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:45565600-45585000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:45567000-45572600	Weak transcription	A549	lung
4	chr12:45568000-45572200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr12:45568200-45574200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr12:45569000-45574200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr12:45569400-45573400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr12:45569600-45572800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:45570000-45593200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr12:45570200-45574000	ZNF genes & repeats	Dnd41	blood
11	chr12:45570400-45572400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
12	chr12:45570600-45574000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr12:45570800-45574200	ZNF genes & repeats	Primary T cells from cord blood	blood
14	chr12:45571000-45594600	Weak transcription	Pancreas	Pancrea
15	chr12:45571200-45572200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
16	chr12:45571600-45586000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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