Variant report

Variant	rs1896024
Chromosome Location	chr12:45560192-45560193
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10437984	0.81[AMR][1000 genomes]
rs10880755	0.94[ASW][hapmap];0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880756	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10880757	1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs10880758	1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs10880761	0.86[JPT][hapmap]
rs10880762	0.85[JPT][hapmap]
rs10880764	0.89[ASW][hapmap];0.85[JPT][hapmap];0.80[MEX][hapmap]
rs11182898	0.88[EUR][1000 genomes]
rs11182899	0.88[EUR][1000 genomes]
rs11182905	0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11182908	0.85[EUR][1000 genomes]
rs11182918	0.86[JPT][hapmap];0.90[MEX][hapmap]
rs11182939	0.81[AMR][1000 genomes]
rs11182949	0.86[JPT][hapmap]
rs12230322	0.86[JPT][hapmap];0.90[MEX][hapmap]
rs12231753	0.87[GIH][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];0.85[EUR][1000 genomes]
rs12320168	0.86[JPT][hapmap]
rs12815577	0.86[JPT][hapmap]
rs1903934	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2052603	0.86[JPT][hapmap];0.90[MEX][hapmap]
rs2408184	0.86[JPT][hapmap]
rs4768085	0.86[JPT][hapmap]
rs61923804	0.88[EUR][1000 genomes]
rs7135988	0.81[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7304481	0.82[ASW][hapmap];0.86[JPT][hapmap]
rs7954282	1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs7956033	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7963057	0.81[AMR][1000 genomes]
rs7971900	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs929903	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45558600-45560800	Enhancers	Fetal Muscle Leg	muscle
2	chr12:45559000-45560800	Enhancers	Psoas Muscle	Psoas
3	chr12:45559200-45560200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:45559200-45560800	Enhancers	HSMMtube	muscle
5	chr12:45559600-45560600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:45559600-45561600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr12:45559800-45560200	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr12:45559800-45560600	Weak transcription	Aorta	Aorta
9	chr12:45559800-45561200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr12:45559800-45562800	Weak transcription	Left Ventricle	heart
11	chr12:45559800-45569400	Weak transcription	Right Ventricle	heart
12	chr12:45560000-45560200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr12:45560000-45561200	Weak transcription	Right Atrium	heart
14	chr12:45560000-45569000	Weak transcription	Adipose Nuclei	Adipose

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