Variant report

Variant	rs61923804
Chromosome Location	chr12:45579808-45579809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45578485..45580248-chr12:45608370..45611253,3	MCF-7	breast:
2	chr12:45578046..45580209-chr12:45593549..45596004,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177119	Chromatin interaction
ENSG00000134297	Chromatin interaction
ENSG00000257738	Chromatin interaction

rs_ID	r²[population]
rs10785556	0.86[EUR][1000 genomes]
rs10880755	0.90[EUR][1000 genomes]
rs10880756	0.90[EUR][1000 genomes]
rs10880757	1.00[EUR][1000 genomes]
rs10880758	1.00[EUR][1000 genomes]
rs11182898	1.00[EUR][1000 genomes]
rs11182899	1.00[EUR][1000 genomes]
rs11182903	0.86[EUR][1000 genomes]
rs11182904	0.86[EUR][1000 genomes]
rs11610233	0.86[EUR][1000 genomes]
rs11611509	0.86[EUR][1000 genomes]
rs11615850	0.80[AMR][1000 genomes]
rs12228733	0.86[EUR][1000 genomes]
rs12299174	0.86[EUR][1000 genomes]
rs12322087	0.86[EUR][1000 genomes]
rs1896024	0.88[EUR][1000 genomes]
rs1903934	0.86[EUR][1000 genomes]
rs35588430	0.86[EUR][1000 genomes]
rs7135988	0.90[EUR][1000 genomes]
rs7954282	1.00[EUR][1000 genomes]
rs7956033	0.90[EUR][1000 genomes]
rs7971900	0.90[EUR][1000 genomes]
rs929903	0.90[EUR][1000 genomes]

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45565400-45586400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:45565600-45585000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:45570000-45593200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:45571000-45594600	Weak transcription	Pancreas	Pancrea
5	chr12:45571600-45586000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:45573200-45586000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr12:45573200-45587200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr12:45573400-45583200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:45573400-45585000	Weak transcription	NHEK	skin
10	chr12:45573400-45594600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:45573600-45593600	Weak transcription	Fetal Thymus	thymus
12	chr12:45574000-45586200	Weak transcription	Dnd41	blood
13	chr12:45574200-45580000	Weak transcription	Primary T cells from cord blood	blood
14	chr12:45574200-45584200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr12:45574200-45586200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr12:45574600-45586000	Weak transcription	Fetal Intestine Small	intestine
17	chr12:45575400-45582200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:45575600-45584400	Weak transcription	Left Ventricle	heart
19	chr12:45576600-45581800	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr12:45576600-45585800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr12:45577600-45584400	Weak transcription	A549	lung
22	chr12:45577600-45584600	Weak transcription	Fetal Stomach	stomach
23	chr12:45578600-45583200	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr12:45578600-45585000	Weak transcription	Primary B cells from peripheral blood	blood
25	chr12:45578600-45585800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr12:45578600-45585800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr12:45578600-45586000	Weak transcription	K562	blood
28	chr12:45578600-45594000	Weak transcription	Thymus	Thymus
29	chr12:45578600-45594600	Weak transcription	Psoas Muscle	Psoas
30	chr12:45578800-45580600	Weak transcription	GM12878-XiMat	blood
31	chr12:45579200-45582800	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr12:45579200-45583000	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr12:45579400-45583000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr12:45579400-45599200	Weak transcription	Primary B cells from cord blood	blood
35	chr12:45579800-45586000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links