Variant report

Variant	rs74083404
Chromosome Location	chr12:45519411-45519412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45512569..45514949-chr12:45519338..45522429,3	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs17095452	0.96[AFR][1000 genomes]
rs55994528	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56162044	1.00[AMR][1000 genomes]
rs56409009	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56842412	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57283482	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57514011	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57516582	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57590365	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57752448	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58025806	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58379974	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58615264	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58938625	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58992779	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59111701	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59344692	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59579391	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60098273	1.00[AMR][1000 genomes]
rs60717004	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61226604	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61679354	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080326	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080929	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080930	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080931	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080935	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080976	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080979	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080982	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080983	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080985	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080987	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080989	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080993	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080995	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080997	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74083221	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74083224	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74083303	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74083306	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74083403	0.91[AFR][1000 genomes]
rs74083405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351644	chr12:45345597-45529449	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45518800-45521600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr12:45519000-45524800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr12:45519000-45525000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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