Variant report

Variant	rs57752448
Chromosome Location	chr12:45510347-45510348
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs17095452	1.00[AFR][1000 genomes]
rs55994528	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56162044	1.00[AMR][1000 genomes]
rs56409009	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56672176	0.82[AFR][1000 genomes]
rs56842412	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57283482	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57514011	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57516582	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57590365	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58025806	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58379974	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58615264	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58938625	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58992779	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59111701	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59344692	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59579391	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60098273	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60717004	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61226604	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61679354	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080682	0.82[AFR][1000 genomes]
rs74080929	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080930	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080931	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080935	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080976	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080979	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080982	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080983	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080985	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080987	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080989	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080993	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080995	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080997	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74083221	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74083224	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74083303	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74083306	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74083403	0.95[AFR][1000 genomes]
rs74083404	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74083405	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351644	chr12:45345597-45529449	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45510200-45510400	Enhancers	Psoas Muscle	Psoas

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