Variant report

Variant	rs74083224
Chromosome Location	chr12:45570803-45570804
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs17095452	0.91[AFR][1000 genomes]
rs55994528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56162044	1.00[AMR][1000 genomes]
rs56409009	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56672176	0.90[AFR][1000 genomes]
rs56842412	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57283482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57514011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57516582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57590365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57752448	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58025806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58379974	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58615264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58938625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58992779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59111701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59344692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59579391	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60098273	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60717004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61226604	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61679354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080326	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080682	0.90[AFR][1000 genomes]
rs74080804	1.00[AMR][1000 genomes]
rs74080853	0.90[AFR][1000 genomes]
rs74080929	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080930	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74080997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74083221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74083303	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74083306	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74083321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74083322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74083403	0.86[AFR][1000 genomes]
rs74083404	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74083405	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45560800-45571200	Weak transcription	Psoas Muscle	Psoas
2	chr12:45561600-45571200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr12:45565400-45586400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr12:45565600-45585000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:45566200-45572000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr12:45567000-45572600	Weak transcription	A549	lung
7	chr12:45567800-45571600	ZNF genes & repeats	Fetal Intestine Small	intestine
8	chr12:45568000-45572200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr12:45568200-45571600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:45568200-45571600	ZNF genes & repeats	Fetal Intestine Large	intestine
11	chr12:45568200-45574200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr12:45568400-45571600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr12:45568600-45571400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr12:45568800-45571000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr12:45569000-45574200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr12:45569200-45571400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
17	chr12:45569200-45571600	ZNF genes & repeats	Thymus	Thymus
18	chr12:45569200-45571800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
19	chr12:45569200-45571800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
20	chr12:45569200-45571800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr12:45569400-45571400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
22	chr12:45569400-45571600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr12:45569400-45573400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr12:45569600-45572800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr12:45569800-45571200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr12:45570000-45571000	Weak transcription	Ovary	ovary
27	chr12:45570000-45571200	Weak transcription	Adipose Nuclei	Adipose
28	chr12:45570000-45571800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr12:45570000-45593200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr12:45570200-45571000	Weak transcription	Primary B cells from cord blood	blood
31	chr12:45570200-45571200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr12:45570200-45574000	ZNF genes & repeats	Dnd41	blood
33	chr12:45570400-45572400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
34	chr12:45570600-45574000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
35	chr12:45570800-45571000	Weak transcription	Esophagus	oesophagus
36	chr12:45570800-45574200	ZNF genes & repeats	Primary T cells from cord blood	blood

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