Variant report

Variant	rs111828002
Chromosome Location	chr9:86462860-86462861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv982312	chr9:86424154-86490046	Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv6590	chr9:86435603-86480442	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv8540	chr9:86458587-86470369	Strong transcription ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
8	esv3440485	chr9:86461957-86464705	Weak transcription Strong transcription Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
9	esv3443435	chr9:86462182-86464480	Strong transcription Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
10	esv3323689	chr9:86462532-86464180	Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86447800-86470800	Weak transcription	Brain Germinal Matrix	brain
2	chr9:86452000-86467800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:86452200-86464000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr9:86456000-86463600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:86456200-86466200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:86456600-86472600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr9:86456800-86463200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:86457000-86464000	Weak transcription	Left Ventricle	heart
9	chr9:86457400-86464200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:86457400-86468400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:86457400-86469000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr9:86457600-86464000	Weak transcription	Pancreas	Pancrea
13	chr9:86458000-86463600	Weak transcription	Esophagus	oesophagus
14	chr9:86459600-86464000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:86459800-86464200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr9:86459800-86466400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr9:86460000-86474000	Weak transcription	Adipose Nuclei	Adipose
18	chr9:86460200-86463800	Weak transcription	Right Ventricle	heart
19	chr9:86460400-86465400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr9:86460600-86463000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:86460600-86463000	Weak transcription	Primary B cells from cord blood	blood
22	chr9:86460600-86463200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr9:86460600-86465400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:86460600-86518200	Weak transcription	Thymus	Thymus
25	chr9:86460800-86463200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr9:86461200-86464000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr9:86461600-86535400	Weak transcription	Fetal Intestine Small	intestine
28	chr9:86461600-86535400	Weak transcription	Ovary	ovary
29	chr9:86461800-86463400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:86461800-86464000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr9:86462000-86463600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr9:86462000-86463800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr9:86462200-86463800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr9:86462200-86463800	Weak transcription	Fetal Muscle Leg	muscle
35	chr9:86462200-86463800	Weak transcription	Lung	lung
36	chr9:86462200-86466400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr9:86462200-86471200	Weak transcription	Liver	Liver
38	chr9:86462200-86475400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr9:86462200-86535200	Weak transcription	Fetal Brain Female	brain
40	chr9:86462400-86464400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr9:86462400-86482400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr9:86462600-86463600	Weak transcription	Fetal Kidney	kidney
43	chr9:86462600-86464200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr9:86462600-86464200	Weak transcription	Brain Angular Gyrus	brain
45	chr9:86462600-86464200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr9:86462600-86464200	Weak transcription	Gastric	stomach
47	chr9:86462600-86464600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr9:86462600-86468600	Weak transcription	Primary T cells from cord blood	blood
49	chr9:86462600-86469600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr9:86462600-86499200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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