Variant report

Variant	rs11185896
Chromosome Location	chr10:91593216-91593217
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10509580	0.86[CHB][hapmap]
rs10881625	0.86[CHB][hapmap]
rs10881684	0.86[AFR][1000 genomes]
rs10881687	0.97[ASN][1000 genomes]
rs10881688	0.97[ASN][1000 genomes]
rs10881689	0.97[ASN][1000 genomes]
rs10881690	0.97[ASN][1000 genomes]
rs10881693	0.97[ASN][1000 genomes]
rs10881694	0.94[ASN][1000 genomes]
rs10881695	0.97[ASN][1000 genomes]
rs11185897	0.97[ASN][1000 genomes]
rs11185901	0.97[ASN][1000 genomes]
rs11185902	0.97[ASN][1000 genomes]
rs12249453	0.97[ASN][1000 genomes]
rs12249784	0.97[ASN][1000 genomes]
rs12258098	0.97[ASN][1000 genomes]
rs12573335	0.97[ASN][1000 genomes]
rs12573371	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1409321	0.86[CHB][hapmap]
rs17128138	0.97[ASN][1000 genomes]
rs17128210	0.91[ASN][1000 genomes]
rs1926138	0.86[CHB][hapmap];1.00[YRI][hapmap]
rs2026552	0.86[CHB][hapmap]
rs2104499	0.86[CHB][hapmap]
rs2148275	0.86[CHB][hapmap]
rs2900752	0.86[CHB][hapmap]
rs35591431	0.89[ASN][1000 genomes]
rs3740038	0.86[CHB][hapmap]
rs4934495	0.86[CHB][hapmap]
rs55707425	0.97[ASN][1000 genomes]
rs7069937	0.86[CHB][hapmap]
rs7071283	0.83[ASN][1000 genomes]
rs7079243	0.86[CHB][hapmap];1.00[YRI][hapmap]
rs729044	0.81[ASN][1000 genomes]
rs74150005	0.97[ASN][1000 genomes]
rs74150013	0.97[ASN][1000 genomes]
rs7900572	0.97[ASN][1000 genomes]
rs7912458	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv869080	chr10:91498641-91712834	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1036581	chr10:91526705-91691536	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1043571	chr10:91568555-92036154	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv551874	chr10:91570211-92036154	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv949678	chr10:91589048-92016474	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91590600-91596600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr10:91592600-91593400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links