Variant report

Variant	rs7079243
Chromosome Location	chr10:91455610-91455611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91447332..91449310-chr10:91453749..91456136,2	K562	blood:
2	chr10:91455393..91457712-chr10:91460648..91462191,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138182	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10082364	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10128186	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1028817	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509580	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10727	0.84[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[CHD][hapmap];0.85[GIH][hapmap];1.00[LWK][hapmap];0.97[TSI][hapmap]
rs10785898	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881622	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881676	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185854	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11185869	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11185893	0.82[ASN][1000 genomes]
rs1326201	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326259	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326262	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1359623	0.85[CHD][hapmap];0.81[ASN][1000 genomes]
rs1359625	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1409321	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409359	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1536314	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555879	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886996	0.91[CEU][hapmap];0.85[GIH][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1926138	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2026552	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148275	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148277	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148312	0.82[ASW][hapmap]
rs2900752	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740038	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933509	0.83[ASN][1000 genomes]
rs4933510	0.82[ASW][hapmap];0.81[CEU][hapmap];0.88[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.86[ASN][1000 genomes]
rs4934490	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4934495	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934499	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586211	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6586214	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586215	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586221	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069937	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071283	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7072760	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7073626	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7073802	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[CHD][hapmap];0.85[GIH][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7077193	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079174	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084946	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729044	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7909502	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912458	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919758	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919861	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943128	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs943130	0.81[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91444600-91460800	Weak transcription	Left Ventricle	heart
2	chr10:91445200-91460600	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:91447200-91459800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:91453000-91460600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:91453400-91459400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:91453800-91460800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:91454400-91456000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr10:91454600-91456200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:91454800-91455800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr10:91455000-91456000	Enhancers	NHEK	skin
11	chr10:91455000-91456200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr10:91455000-91456200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:91455000-91460400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr10:91455200-91456000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:91455400-91456000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr10:91455400-91456000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr10:91455400-91460600	Weak transcription	Psoas Muscle	Psoas
18	chr10:91455600-91455800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:91455600-91456000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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