Variant report

Variant	rs4934490
Chromosome Location	chr10:91399732-91399733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91389433..91391582-chr10:91398528..91400934,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10082364	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10128186	0.89[EUR][1000 genomes]
rs1028817	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10509580	0.90[ASW][hapmap];0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs10785898	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10881622	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10881625	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10881676	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11185854	0.89[EUR][1000 genomes]
rs11185869	0.89[EUR][1000 genomes]
rs1326201	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1326259	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1326262	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1359623	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1359625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409321	0.90[ASW][hapmap];0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1409359	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1536314	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1555879	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1886996	0.90[ASW][hapmap];0.90[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1926138	0.95[CEU][hapmap];0.88[CHB][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2026552	0.81[CEU][hapmap];0.88[CHB][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2104499	0.81[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2148275	0.95[CEU][hapmap];0.88[CHB][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2148277	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2900752	0.95[CEU][hapmap];0.88[CHB][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3740038	0.95[CEU][hapmap];0.88[CHB][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4933509	0.94[ASN][1000 genomes]
rs4933510	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap];0.97[ASN][1000 genomes]
rs4934495	0.95[CEU][hapmap];0.88[CHB][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4934499	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6586211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586214	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6586215	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6586221	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7069937	0.90[ASW][hapmap];0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7071283	0.82[EUR][1000 genomes]
rs7072760	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7073626	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7073802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077193	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7079174	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7079243	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7084946	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs729044	0.85[EUR][1000 genomes]
rs7909502	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7912458	0.94[CEU][hapmap];0.84[CHB][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7919758	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7919861	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs943128	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.90[LWK][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs943130	0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
2	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
3	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:91370200-91403200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:91371800-91401600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:91371800-91403200	Weak transcription	HSMMtube	muscle
8	chr10:91380600-91403200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:91383800-91402600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:91385000-91403000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:91385400-91403000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:91385600-91402800	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:91385800-91403200	Weak transcription	Fetal Brain Male	brain
14	chr10:91386000-91402800	Weak transcription	NH-A	brain
15	chr10:91386000-91403000	Weak transcription	NHDF-Ad	bronchial
16	chr10:91386000-91403200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:91386000-91403200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr10:91386000-91403200	Weak transcription	Ovary	ovary
19	chr10:91386800-91403200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:91388200-91403400	Weak transcription	Thymus	Thymus
21	chr10:91389600-91402800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:91391400-91401600	Weak transcription	Fetal Lung	lung
23	chr10:91392200-91401200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:91392200-91402200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr10:91392600-91403000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr10:91392600-91403200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:91392600-91403200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr10:91392800-91402800	Weak transcription	Primary B cells from cord blood	blood
29	chr10:91393000-91403200	Weak transcription	Fetal Thymus	thymus
30	chr10:91393200-91401600	Weak transcription	Fetal Kidney	kidney
31	chr10:91393800-91402600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:91393800-91402800	Weak transcription	A549	lung
33	chr10:91393800-91403000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:91394000-91402800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr10:91394200-91401600	Weak transcription	Hela-S3	cervix
36	chr10:91394200-91401800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr10:91394200-91403000	Weak transcription	Fetal Brain Female	brain
38	chr10:91394400-91401600	Weak transcription	HMEC	breast
39	chr10:91394400-91403200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:91394800-91400200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:91394800-91401600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:91394800-91401800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:91394800-91402000	Weak transcription	NHEK	skin
44	chr10:91394800-91403000	Weak transcription	Brain Hippocampus Middle	brain
45	chr10:91394800-91403200	Weak transcription	HSMM	muscle
46	chr10:91395200-91401600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr10:91395400-91403800	Weak transcription	Lung	lung
48	chr10:91395800-91400200	Weak transcription	Right Ventricle	heart
49	chr10:91395800-91401600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr10:91396000-91403000	Weak transcription	Primary T cells from cord blood	blood

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