Variant report

Variant	rs6586211
Chromosome Location	chr10:91390834-91390835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91390559..91394357-chr10:91401032..91405711,7	MCF-7	breast:
2	chr10:91388415..91393520-chr10:91403562..91406264,5	MCF-7	breast:
3	chr10:91389433..91391582-chr10:91398528..91400934,2	K562	blood:

Variant related genes	Relation type
ENSG00000249962	Chromatin interaction
ENSG00000152782	Chromatin interaction
ENSG00000232936	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10082364	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10128186	0.88[EUR][1000 genomes]
rs1028817	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10509580	0.95[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10785898	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10881622	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10881625	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10881676	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11185854	0.88[EUR][1000 genomes]
rs11185869	0.88[EUR][1000 genomes]
rs1326201	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1326259	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1326262	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1359623	0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1359625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409321	0.95[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1409359	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1536314	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1555879	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1886996	0.90[CEU][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1926138	0.95[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2026552	0.82[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2104499	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2148275	0.95[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2148277	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2900752	0.95[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3740038	0.95[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4933509	0.94[ASN][1000 genomes]
rs4933510	0.80[CEU][hapmap];1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs4934490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934495	0.95[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4934499	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6586214	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6586215	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6586221	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7069937	0.95[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7071283	0.80[EUR][1000 genomes]
rs7072760	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7073626	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7073802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077193	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7079174	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7079243	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7084946	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs729044	0.84[EUR][1000 genomes]
rs7909502	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7912458	0.95[CEU][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7919758	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7919861	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs943128	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs943130	0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
2	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
3	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
4	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:91359400-91393000	Weak transcription	NHEK	skin
6	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:91370200-91403200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:91371000-91392800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:91371800-91393600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:91371800-91401600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:91371800-91403200	Weak transcription	HSMMtube	muscle
12	chr10:91372000-91393400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:91376000-91394200	Weak transcription	Primary T cells from cord blood	blood
14	chr10:91380600-91403200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:91381800-91392000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:91383800-91392800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:91383800-91392800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:91383800-91393400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr10:91383800-91402600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:91384000-91394600	Weak transcription	Dnd41	blood
21	chr10:91384400-91393600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:91384800-91392600	Weak transcription	Psoas Muscle	Psoas
23	chr10:91385000-91393600	Weak transcription	Left Ventricle	heart
24	chr10:91385000-91393800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr10:91385000-91403000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr10:91385200-91391000	Weak transcription	Fetal Intestine Small	intestine
27	chr10:91385400-91391800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:91385400-91393000	Weak transcription	HSMM	muscle
29	chr10:91385400-91403000	Weak transcription	Primary hematopoietic stem cells	blood
30	chr10:91385600-91402800	Weak transcription	Fetal Muscle Leg	muscle
31	chr10:91385800-91395600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:91385800-91403200	Weak transcription	Fetal Brain Male	brain
33	chr10:91386000-91393000	Weak transcription	GM12878-XiMat	blood
34	chr10:91386000-91393000	Weak transcription	Osteobl	bone
35	chr10:91386000-91393600	Weak transcription	Right Ventricle	heart
36	chr10:91386000-91394000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:91386000-91402800	Weak transcription	NH-A	brain
38	chr10:91386000-91403000	Weak transcription	NHDF-Ad	bronchial
39	chr10:91386000-91403200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr10:91386000-91403200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr10:91386000-91403200	Weak transcription	Ovary	ovary
42	chr10:91386600-91392600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr10:91386600-91397000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr10:91386800-91393200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:91386800-91403200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:91387400-91392600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:91387800-91391800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr10:91388200-91396800	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr10:91388200-91403400	Weak transcription	Thymus	Thymus
50	chr10:91389000-91393000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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