Variant report

Variant	rs7073626
Chromosome Location	chr10:91428404-91428405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91427748..91429967-chr10:91430864..91434039,3	K562	blood:
2	chr10:91426396..91428271-chr10:91428342..91432037,3	MCF-7	breast:
3	chr10:91427349..91430030-chr10:91442278..91445461,3	K562	blood:
4	chr10:91423205..91426189-chr10:91428297..91431158,2	K562	blood:
5	chr10:91428126..91429967-chr10:91431808..91434039,2	K562	blood:
6	chr10:91427763..91430030-chr10:91442877..91445461,2	K562	blood:
7	chr10:91427066..91429091-chr10:91459571..91461477,2	K562	blood:

Variant related genes	Relation type
ENSG00000138182	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10082364	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10128186	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1028817	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10509580	0.90[ASW][hapmap];0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.81[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap]
rs10785898	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10881622	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10881625	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10881676	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11185854	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11185869	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1326201	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1326259	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1326262	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1359623	0.89[CHB][hapmap];1.00[CHD][hapmap];0.95[ASN][1000 genomes]
rs1359625	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1409321	0.90[ASW][hapmap];0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.81[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1409359	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536314	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1555879	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1886996	0.90[ASW][hapmap];0.91[CEU][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.97[LWK][hapmap];0.81[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1926138	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2026552	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2104499	0.81[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2148275	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2148277	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2900752	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3740038	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4933509	0.97[ASN][1000 genomes]
rs4933510	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap];1.00[ASN][1000 genomes]
rs4934490	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4934495	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4934499	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6586211	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6586214	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6586215	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6586221	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7069937	0.90[ASW][hapmap];0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.81[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7071283	0.85[EUR][1000 genomes]
rs7072760	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7073802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7077193	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7079174	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7079243	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7084946	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs729044	0.88[EUR][1000 genomes]
rs7909502	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7912458	0.95[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7919758	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7919861	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs943128	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.93[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943130	0.89[CHB][hapmap];0.95[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91425400-91430000	Weak transcription	HSMMtube	muscle
2	chr10:91427800-91429600	Enhancers	Fetal Intestine Large	intestine
3	chr10:91427800-91431400	Enhancers	HepG2	liver
4	chr10:91428000-91428600	Enhancers	HSMM	muscle
5	chr10:91428200-91428600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
6	chr10:91428200-91428600	Enhancers	HMEC	breast
7	chr10:91428200-91429000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:91428200-91429000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:91428200-91429000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:91428200-91429000	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr10:91428200-91429200	Enhancers	NHEK	skin
12	chr10:91428200-91429600	Enhancers	Fetal Intestine Small	intestine
13	chr10:91428400-91428600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:91428400-91428600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
15	chr10:91428400-91431800	Enhancers	Fetal Muscle Leg	muscle

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