Variant report

Variant	rs11185854
Chromosome Location	chr10:91473975-91473976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91403362..91406467-chr10:91470802..91475133,4	MCF-7	breast:
2	chr10:91460376..91463367-chr10:91472485..91474979,2	K562	blood:
3	chr10:91469218..91474577-chr10:91475007..91479168,10	K562	blood:
4	chr10:91473623..91477371-chr10:91489479..91493705,4	K562	blood:

Variant related genes	Relation type
ENSG00000249962	Chromatin interaction
ENSG00000232936	Chromatin interaction
ENSG00000152782	Chromatin interaction
ENSG00000138182	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10082364	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10128186	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1028817	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10509580	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10785898	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10881622	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10881625	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10881676	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11185869	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1326201	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1326259	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1326262	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1359625	0.87[EUR][1000 genomes]
rs1409321	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1409359	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1536314	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1555879	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1886996	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1926138	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2026552	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2104499	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2148275	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2148277	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2900752	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3740038	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4933510	0.81[ASN][1000 genomes]
rs4934490	0.89[EUR][1000 genomes]
rs4934495	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4934499	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6586211	0.88[EUR][1000 genomes]
rs6586214	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6586215	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6586221	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7069937	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7071283	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7072760	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7073626	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7073802	0.84[EUR][1000 genomes]
rs7077193	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7079174	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7079243	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7084946	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs729044	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7909502	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7912458	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7919758	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7919861	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs943128	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054572	chr10:91471956-91537070	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
2	chr10:91461800-91505800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:91462000-91505800	Weak transcription	Left Ventricle	heart
4	chr10:91462200-91474000	Weak transcription	Spleen	Spleen
5	chr10:91462200-91476600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:91462200-91476600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr10:91462200-91476600	Weak transcription	Fetal Intestine Large	intestine
8	chr10:91462200-91477600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr10:91462200-91478000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:91462200-91480400	Weak transcription	Fetal Stomach	stomach
11	chr10:91462200-91480600	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:91462200-91482400	Weak transcription	Pancreas	Pancrea
13	chr10:91462200-91486400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr10:91462200-91505600	Weak transcription	Esophagus	oesophagus
15	chr10:91462200-91505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:91462200-91505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:91462200-91505800	Weak transcription	Gastric	stomach
18	chr10:91462200-91505800	Weak transcription	Lung	lung
19	chr10:91462400-91476000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr10:91462400-91477600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr10:91462400-91479200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr10:91462400-91480000	Weak transcription	Fetal Kidney	kidney
23	chr10:91462400-91480600	Weak transcription	Primary T cells from cord blood	blood
24	chr10:91462400-91480600	Weak transcription	Fetal Intestine Small	intestine
25	chr10:91462400-91484600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr10:91462400-91488600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr10:91462400-91505600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr10:91462600-91475800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr10:91462600-91477600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:91462800-91475800	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr10:91462800-91476600	Weak transcription	Primary B cells from cord blood	blood
32	chr10:91463200-91477600	Weak transcription	NH-A	brain
33	chr10:91463400-91476000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:91463400-91480600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr10:91463400-91484200	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr10:91463400-91505600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr10:91463400-91505800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr10:91463400-91521600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr10:91463600-91477000	Weak transcription	HMEC	breast
40	chr10:91464000-91486800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:91465600-91479400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:91465800-91474200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr10:91465800-91476800	Weak transcription	NHEK	skin
44	chr10:91465800-91505600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr10:91466200-91476000	Weak transcription	HepG2	liver
46	chr10:91466200-91484200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:91466600-91506800	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr10:91466800-91476600	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr10:91467000-91491000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr10:91467200-91489000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links