Variant report

Variant	rs7071283
Chromosome Location	chr10:91574774-91574775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10082364	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10128186	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1028817	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10509580	0.86[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10727	0.81[CEU][hapmap];0.88[CHB][hapmap]
rs10785898	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881622	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881625	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881676	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881687	0.81[ASN][1000 genomes]
rs10881688	0.81[ASN][1000 genomes]
rs10881689	0.81[ASN][1000 genomes]
rs10881690	0.81[ASN][1000 genomes]
rs10881693	0.81[ASN][1000 genomes]
rs10881695	0.81[ASN][1000 genomes]
rs11185854	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11185869	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11185893	0.92[ASN][1000 genomes]
rs11185896	0.83[ASN][1000 genomes]
rs11185897	0.81[ASN][1000 genomes]
rs11185901	0.81[ASN][1000 genomes]
rs11185902	0.81[ASN][1000 genomes]
rs12249453	0.81[ASN][1000 genomes]
rs12249784	0.81[ASN][1000 genomes]
rs12258098	0.81[ASN][1000 genomes]
rs12573335	0.81[ASN][1000 genomes]
rs12573371	0.81[ASN][1000 genomes]
rs1326201	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1326259	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1326262	0.83[EUR][1000 genomes]
rs1359625	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs1409321	0.86[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1409359	0.83[EUR][1000 genomes]
rs1536314	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1555879	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17128138	0.81[ASN][1000 genomes]
rs1886996	0.81[CEU][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1926138	0.86[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2026552	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2104499	0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2148275	0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2148277	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2900752	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3740038	0.86[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4933510	0.88[CHB][hapmap]
rs4934490	0.81[CEU][hapmap];0.88[CHB][hapmap];0.82[EUR][1000 genomes]
rs4934495	0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4934499	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55707425	0.81[ASN][1000 genomes]
rs6586211	0.86[CEU][hapmap];0.82[CHB][hapmap];0.80[EUR][1000 genomes]
rs6586214	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6586215	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6586221	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7069937	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7072760	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7073626	0.81[CEU][hapmap];0.88[CHB][hapmap];0.80[YRI][hapmap];0.85[EUR][1000 genomes]
rs7073802	0.81[CEU][hapmap];0.88[CHB][hapmap]
rs7077193	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7079174	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7079243	0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7084946	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs729044	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74150005	0.81[ASN][1000 genomes]
rs74150013	0.81[ASN][1000 genomes]
rs7900572	0.81[ASN][1000 genomes]
rs7909502	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7912458	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7919758	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7919861	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs943128	0.81[CEU][hapmap];0.88[CHB][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv869080	chr10:91498641-91712834	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1036581	chr10:91526705-91691536	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1043571	chr10:91568555-92036154	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv551874	chr10:91570211-92036154	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91573400-91574800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:91574200-91574800	Enhancers	Fetal Muscle Leg	muscle
3	chr10:91574200-91576400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:91574400-91575200	Flanking Active TSS	HepG2	liver
5	chr10:91574600-91575200	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links