Variant report

Variant	rs1359625
Chromosome Location	chr10:91395019-91395020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91394085..91396523-chr10:91404909..91406544,2	MCF-7	breast:
2	chr10:91394092..91396583-chr10:91459317..91461130,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249962	Chromatin interaction
ENSG00000232936	Chromatin interaction
ENSG00000235100	Chromatin interaction
ENSG00000152782	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10082364	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10128186	0.87[EUR][1000 genomes]
rs1028817	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10509580	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10785898	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10881622	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10881625	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10881676	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11185854	0.87[EUR][1000 genomes]
rs11185869	0.87[EUR][1000 genomes]
rs1326201	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1326259	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1326262	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1359623	0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1409321	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1409359	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1536314	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1555879	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1886996	0.90[CEU][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1926138	0.95[CEU][hapmap];0.86[CHB][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2026552	0.81[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2104499	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2148275	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2148277	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2900752	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3740038	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4933509	0.94[ASN][1000 genomes]
rs4933510	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs4934490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934495	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4934499	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6586211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586214	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6586215	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6586221	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7069937	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7072760	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7073626	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7073802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077193	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7079174	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7079243	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7084946	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs729044	0.83[EUR][1000 genomes]
rs7909502	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7912458	0.95[CEU][hapmap];0.84[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7919758	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7919861	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs943128	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs943130	0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
2	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
3	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:91370200-91403200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:91371800-91401600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:91371800-91403200	Weak transcription	HSMMtube	muscle
8	chr10:91380600-91403200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:91383800-91402600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:91385000-91403000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:91385400-91403000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:91385600-91402800	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:91385800-91395600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:91385800-91403200	Weak transcription	Fetal Brain Male	brain
15	chr10:91386000-91402800	Weak transcription	NH-A	brain
16	chr10:91386000-91403000	Weak transcription	NHDF-Ad	bronchial
17	chr10:91386000-91403200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:91386000-91403200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:91386000-91403200	Weak transcription	Ovary	ovary
20	chr10:91386600-91397000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr10:91386800-91403200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:91388200-91396800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr10:91388200-91403400	Weak transcription	Thymus	Thymus
24	chr10:91389600-91402800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:91390600-91399200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:91391000-91398000	Weak transcription	K562	blood
27	chr10:91391200-91395600	Weak transcription	Fetal Stomach	stomach
28	chr10:91391400-91401600	Weak transcription	Fetal Lung	lung
29	chr10:91391800-91395800	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr10:91391800-91399600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:91392000-91396000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr10:91392000-91396000	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr10:91392200-91401200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr10:91392200-91402200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr10:91392600-91403000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr10:91392600-91403200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr10:91392600-91403200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr10:91392800-91395200	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr10:91392800-91396000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr10:91392800-91398800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr10:91392800-91402800	Weak transcription	Primary B cells from cord blood	blood
42	chr10:91393000-91395400	Strong transcription	GM12878-XiMat	blood
43	chr10:91393000-91395800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr10:91393000-91403200	Weak transcription	Fetal Thymus	thymus
45	chr10:91393200-91395800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr10:91393200-91395800	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr10:91393200-91399200	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr10:91393200-91401600	Weak transcription	Fetal Kidney	kidney
49	chr10:91393400-91396400	Weak transcription	Placenta	Placenta
50	chr10:91393600-91399200	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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