Variant report

Variant	rs10082364
Chromosome Location	chr10:91462946-91462947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:91369983..91372122-chr10:91461089..91464056,2	K562	blood:
2	chr10:91439034..91440797-chr10:91461524..91463146,2	K562	blood:
3	chr10:91401983..91406312-chr10:91459063..91463449,10	K562	blood:
4	chr10:91402369..91405488-chr10:91459565..91463449,8	K562	blood:
5	chr10:91402715..91410625-chr10:91458897..91464646,18	MCF-7	breast:
6	chr10:91432281..91434628-chr10:91462753..91464911,2	MCF-7	breast:
7	chr10:91410370..91413096-chr10:91461622..91464286,2	K562	blood:
8	chr10:91315217..91317113-chr10:91460581..91463355,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000152782	Chromatin interaction
ENSG00000152779	Chromatin interaction
ENSG00000225836	Chromatin interaction
ENSG00000232936	Chromatin interaction
ENSG00000249962	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10128186	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1028817	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509580	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785898	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881622	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881625	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881676	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185854	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11185869	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11185893	0.82[ASN][1000 genomes]
rs1326201	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326259	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326262	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1359623	0.81[ASN][1000 genomes]
rs1359625	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1409321	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409359	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1536314	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555879	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886996	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1926138	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2026552	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104499	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148275	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148277	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2900752	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740038	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933509	0.83[ASN][1000 genomes]
rs4933510	0.86[ASN][1000 genomes]
rs4934490	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4934495	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934499	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586211	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6586214	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586215	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586221	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069937	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071283	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7072760	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7073626	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7073802	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7077193	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079174	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079243	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084946	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729044	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7909502	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912458	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919758	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919861	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943128	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs943130	0.81[ASN][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91459400-91463000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:91460000-91465400	Active TSS	K562	blood
3	chr10:91460200-91463000	Active TSS	A549	lung
4	chr10:91460200-91463000	Active TSS	GM12878-XiMat	blood
5	chr10:91460400-91463000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:91460400-91463000	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr10:91460400-91463000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:91460400-91463000	Active TSS	HMEC	breast
9	chr10:91460600-91463200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:91460800-91463000	Active TSS	H9 Cell Line	embryonic stem cell
11	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
12	chr10:91461800-91505800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:91462000-91463400	Flanking Active TSS	HUVEC	blood vessel
14	chr10:91462000-91464000	Flanking Active TSS	Dnd41	blood
15	chr10:91462000-91505800	Weak transcription	Left Ventricle	heart
16	chr10:91462200-91463000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:91462200-91463000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:91462200-91463200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:91462200-91463200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:91462200-91463200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:91462200-91463200	Enhancers	Fetal Heart	heart
22	chr10:91462200-91463400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr10:91462200-91466600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:91462200-91467000	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr10:91462200-91467200	Weak transcription	Fetal Brain Male	brain
26	chr10:91462200-91470000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:91462200-91470000	Weak transcription	Ovary	ovary
28	chr10:91462200-91472000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:91462200-91474000	Weak transcription	Spleen	Spleen
30	chr10:91462200-91476600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr10:91462200-91476600	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr10:91462200-91476600	Weak transcription	Fetal Intestine Large	intestine
33	chr10:91462200-91477600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr10:91462200-91478000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr10:91462200-91480400	Weak transcription	Fetal Stomach	stomach
36	chr10:91462200-91480600	Weak transcription	Fetal Muscle Leg	muscle
37	chr10:91462200-91482400	Weak transcription	Pancreas	Pancrea
38	chr10:91462200-91486400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:91462200-91505600	Weak transcription	Esophagus	oesophagus
40	chr10:91462200-91505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:91462200-91505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr10:91462200-91505800	Weak transcription	Gastric	stomach
43	chr10:91462200-91505800	Weak transcription	Lung	lung
44	chr10:91462400-91463400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:91462400-91463400	Flanking Active TSS	NHEK	skin
46	chr10:91462400-91464000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr10:91462400-91466400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:91462400-91467000	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr10:91462400-91472000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr10:91462400-91476000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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