Variant report

Variant	rs1359623
Chromosome Location	chr10:91402542-91402543
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91402369..91405488-chr10:91459565..91463449,8	K562	blood:
2	chr10:91371070..91374344-chr10:91402272..91406788,6	MCF-7	breast:
3	chr10:91369955..91372663-chr10:91402410..91404170,2	K562	blood:
4	chr10:91401983..91406312-chr10:91459063..91463449,10	K562	blood:
5	chr10:91402267..91405688-chr10:91407429..91411344,10	K562	blood:

Variant related genes	Relation type
ENSG00000138182	Chromatin interaction
ENSG00000235100	Chromatin interaction
ENSG00000152782	Chromatin interaction
ENSG00000225836	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10082364	0.81[ASN][1000 genomes]
rs1028817	0.81[ASN][1000 genomes]
rs10509580	1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs10727	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10785898	0.81[ASN][1000 genomes]
rs10881622	0.81[ASN][1000 genomes]
rs10881625	0.81[ASN][1000 genomes]
rs10881676	0.81[ASN][1000 genomes]
rs1326201	0.81[ASN][1000 genomes]
rs1326259	0.81[ASN][1000 genomes]
rs1326262	0.95[ASN][1000 genomes]
rs1359625	0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1409321	1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs1409359	0.95[ASN][1000 genomes]
rs1536314	0.81[ASN][1000 genomes]
rs1536315	0.93[EUR][1000 genomes]
rs1555879	0.81[ASN][1000 genomes]
rs1886996	0.85[CHD][hapmap];0.81[ASN][1000 genomes]
rs1926138	0.81[ASN][1000 genomes]
rs2026552	0.81[ASN][1000 genomes]
rs2104499	1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs2148275	0.81[ASN][1000 genomes]
rs2148277	0.81[ASN][1000 genomes]
rs2900752	0.81[ASN][1000 genomes]
rs3740038	0.81[ASN][1000 genomes]
rs4933509	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4933510	0.89[CHB][hapmap];1.00[CHD][hapmap];0.95[ASN][1000 genomes]
rs4934490	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4934495	0.81[ASN][1000 genomes]
rs4934499	0.81[ASN][1000 genomes]
rs6586211	0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6586214	0.81[ASN][1000 genomes]
rs6586215	0.81[ASN][1000 genomes]
rs6586221	0.81[ASN][1000 genomes]
rs7069937	1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs7073626	0.89[CHB][hapmap];1.00[CHD][hapmap];0.95[ASN][1000 genomes]
rs7073802	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7077193	0.81[ASN][1000 genomes]
rs7079174	0.81[ASN][1000 genomes]
rs7079243	0.85[CHD][hapmap];0.81[ASN][1000 genomes]
rs7084946	0.81[ASN][1000 genomes]
rs7909502	0.81[ASN][1000 genomes]
rs7912458	0.81[ASN][1000 genomes]
rs7919758	0.81[ASN][1000 genomes]
rs7919861	0.81[ASN][1000 genomes]
rs943128	0.89[CHB][hapmap];0.92[CHD][hapmap];0.95[ASN][1000 genomes]
rs943130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1359623	KIF20B	cis	cerebellum	SCAN
rs1359623	KIF20B	cis	parietal	SCAN

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
2	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
3	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:91370200-91403200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:91371800-91403200	Weak transcription	HSMMtube	muscle
7	chr10:91380600-91403200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:91383800-91402600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:91385000-91403000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:91385400-91403000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:91385600-91402800	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:91385800-91403200	Weak transcription	Fetal Brain Male	brain
13	chr10:91386000-91402800	Weak transcription	NH-A	brain
14	chr10:91386000-91403000	Weak transcription	NHDF-Ad	bronchial
15	chr10:91386000-91403200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:91386000-91403200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:91386000-91403200	Weak transcription	Ovary	ovary
18	chr10:91386800-91403200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr10:91388200-91403400	Weak transcription	Thymus	Thymus
20	chr10:91389600-91402800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:91392600-91403000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr10:91392600-91403200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:91392600-91403200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr10:91392800-91402800	Weak transcription	Primary B cells from cord blood	blood
25	chr10:91393000-91403200	Weak transcription	Fetal Thymus	thymus
26	chr10:91393800-91402600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:91393800-91402800	Weak transcription	A549	lung
28	chr10:91393800-91403000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:91394000-91402800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr10:91394200-91403000	Weak transcription	Fetal Brain Female	brain
31	chr10:91394400-91403200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr10:91394800-91403000	Weak transcription	Brain Hippocampus Middle	brain
33	chr10:91394800-91403200	Weak transcription	HSMM	muscle
34	chr10:91395400-91403800	Weak transcription	Lung	lung
35	chr10:91396000-91403000	Weak transcription	Primary T cells from cord blood	blood
36	chr10:91396000-91403800	Weak transcription	Spleen	Spleen
37	chr10:91396400-91403200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr10:91397000-91403200	Weak transcription	Fetal Stomach	stomach
39	chr10:91397200-91403000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:91397400-91402800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:91397600-91403000	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr10:91398200-91403000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:91399000-91402600	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr10:91399200-91402600	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:91399400-91403000	Enhancers	Fetal Intestine Large	intestine
46	chr10:91399600-91403000	Enhancers	Fetal Heart	heart
47	chr10:91399600-91403400	Weak transcription	Left Ventricle	heart
48	chr10:91399800-91403000	Weak transcription	Right Atrium	heart
49	chr10:91400200-91403200	Weak transcription	Brain Anterior Caudate	brain
50	chr10:91401000-91403000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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