Variant report

Variant	rs11187009
Chromosome Location	chr10:94217038-94217039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10882091	0.88[ASW][hapmap]
rs11187001	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11187025	0.82[CEU][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap]
rs11187027	0.86[ASN][1000 genomes]
rs11187031	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187032	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187040	0.86[ASN][1000 genomes]
rs11187064	1.00[CEU][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11187065	0.82[CEU][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11187067	0.86[ASN][1000 genomes]
rs11187069	0.86[ASN][1000 genomes]
rs11187070	0.86[ASN][1000 genomes]
rs11187073	0.82[CEU][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.86[ASN][1000 genomes]
rs12356508	0.93[ASN][1000 genomes]
rs12358677	0.86[ASN][1000 genomes]
rs17445028	0.82[CEU][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.86[ASN][1000 genomes]
rs17445328	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35120790	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35616984	0.86[ASN][1000 genomes]
rs4646953	0.86[ASN][1000 genomes]
rs4646955	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs56289118	0.86[ASN][1000 genomes]
rs61861406	0.86[ASN][1000 genomes]
rs6583830	0.88[ASW][hapmap]
rs72811205	0.86[ASN][1000 genomes]
rs7914814	0.88[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv551924	chr10:94212742-94290484	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94205800-94221800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:94206400-94222600	Weak transcription	HSMMtube	muscle
3	chr10:94207800-94222000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr10:94208000-94219800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:94208000-94222400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:94208000-94223600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr10:94208000-94224000	Weak transcription	Fetal Kidney	kidney
8	chr10:94208400-94219200	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:94208400-94276800	Weak transcription	Stomach Mucosa	stomach
10	chr10:94209000-94225800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:94209200-94217200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr10:94209400-94218600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr10:94209400-94225800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:94209400-94231400	Strong transcription	Duodenum Mucosa	Duodenum
15	chr10:94209800-94234400	Weak transcription	Fetal Heart	heart
16	chr10:94210000-94224200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:94210000-94224800	Weak transcription	Brain Germinal Matrix	brain
18	chr10:94210000-94243000	Weak transcription	Fetal Brain Female	brain
19	chr10:94210400-94231800	Strong transcription	Adipose Nuclei	Adipose
20	chr10:94210400-94235600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:94210400-94239200	Weak transcription	Fetal Brain Male	brain
22	chr10:94210600-94220200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:94210600-94221400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:94210600-94231800	Strong transcription	Liver	Liver
25	chr10:94210600-94250000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr10:94210800-94217400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:94210800-94218000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr10:94211000-94235600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:94211200-94225800	Strong transcription	Osteobl	bone
30	chr10:94211400-94217200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr10:94211400-94217600	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr10:94211400-94218200	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr10:94211400-94221400	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr10:94211400-94225800	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:94211400-94231800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr10:94211400-94235600	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr10:94211400-94235800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:94211400-94253200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr10:94211600-94218200	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr10:94211800-94217800	Strong transcription	HSMM	muscle
41	chr10:94211800-94221200	Strong transcription	Primary T cells from cord blood	blood
42	chr10:94211800-94230600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:94212000-94217600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:94212000-94217800	Strong transcription	Primary B cells from cord blood	blood
45	chr10:94212000-94217800	Strong transcription	Dnd41	blood
46	chr10:94212000-94232400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:94212200-94217400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr10:94212200-94225800	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr10:94212400-94233800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:94212600-94224800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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