Variant report

Variant	rs12356508
Chromosome Location	chr10:94241094-94241095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11187009	0.93[ASN][1000 genomes]
rs11187025	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187027	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11187031	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11187032	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11187040	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11187065	0.81[AMR][1000 genomes]
rs11187067	0.81[AMR][1000 genomes]
rs11187069	0.81[AMR][1000 genomes]
rs11187070	0.81[AMR][1000 genomes]
rs11187073	0.81[AMR][1000 genomes]
rs12358677	0.81[AMR][1000 genomes]
rs12776190	0.81[AMR][1000 genomes]
rs17445028	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35120790	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35616984	0.81[AMR][1000 genomes]
rs4646953	0.81[AMR][1000 genomes]
rs56289118	0.81[AMR][1000 genomes]
rs61861406	0.81[AMR][1000 genomes]
rs72811205	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv551924	chr10:94212742-94290484	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv551925	chr10:94224165-94288429	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv1802816	chr10:94232247-94294291	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94208400-94276800	Weak transcription	Stomach Mucosa	stomach
2	chr10:94210000-94243000	Weak transcription	Fetal Brain Female	brain
3	chr10:94210600-94250000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr10:94211400-94253200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:94212800-94270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:94217400-94251800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:94217600-94270200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:94217800-94245600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr10:94218000-94245400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr10:94218200-94251800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:94222600-94243200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:94222800-94250800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:94223200-94252600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:94225400-94248800	Weak transcription	Brain Germinal Matrix	brain
15	chr10:94225600-94248400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:94225600-94252600	Weak transcription	Fetal Kidney	kidney
17	chr10:94226000-94245000	Weak transcription	K562	blood
18	chr10:94227400-94251200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:94227800-94243000	Weak transcription	Colonic Mucosa	Colon
20	chr10:94228000-94242800	Weak transcription	NHDF-Ad	bronchial
21	chr10:94229200-94246400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:94230000-94243200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:94230000-94276400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:94230200-94243000	Weak transcription	Brain Hippocampus Middle	brain
25	chr10:94230200-94243000	Weak transcription	Lung	lung
26	chr10:94230200-94243200	Weak transcription	Brain Angular Gyrus	brain
27	chr10:94230200-94243200	Weak transcription	Brain Substantia Nigra	brain
28	chr10:94230200-94243200	Weak transcription	Gastric	stomach
29	chr10:94230200-94246600	Weak transcription	Psoas Muscle	Psoas
30	chr10:94230200-94247800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr10:94230400-94276400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:94230600-94249000	Weak transcription	NHLF	lung
33	chr10:94230600-94249400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr10:94232400-94241200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr10:94232800-94243000	Weak transcription	Small Intestine	intestine
36	chr10:94232800-94251200	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr10:94233000-94241800	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr10:94233200-94251000	Strong transcription	Liver	Liver
39	chr10:94233200-94254000	Strong transcription	Adipose Nuclei	Adipose
40	chr10:94233600-94250600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:94233800-94251200	Strong transcription	Left Ventricle	heart
42	chr10:94234400-94241400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr10:94234400-94242000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:94234600-94241200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr10:94234600-94241200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr10:94234600-94241200	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr10:94235000-94241200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr10:94235000-94245600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr10:94235400-94243000	Weak transcription	Thymus	Thymus
50	chr10:94235400-94243200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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