Variant report

Variant	rs56289118
Chromosome Location	chr10:94284918-94284919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10736069	0.83[AFR][1000 genomes]
rs10786050	0.83[AFR][1000 genomes]
rs10882091	0.83[AFR][1000 genomes]
rs10882094	0.83[AFR][1000 genomes]
rs11187009	0.86[ASN][1000 genomes]
rs11187025	0.81[AMR][1000 genomes]
rs11187027	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187031	0.86[ASN][1000 genomes]
rs11187032	0.86[ASN][1000 genomes]
rs11187040	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187064	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11187065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187069	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187070	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187073	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12356508	0.81[AMR][1000 genomes]
rs12358677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12776190	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17445028	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17445328	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2421941	0.86[AFR][1000 genomes]
rs35418143	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35616984	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4646953	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4646955	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4933734	0.81[AFR][1000 genomes]
rs61861406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583827	0.83[AFR][1000 genomes]
rs6583830	0.83[AFR][1000 genomes]
rs7071905	0.83[AFR][1000 genomes]
rs7092522	0.82[AFR][1000 genomes]
rs7096101	0.83[AFR][1000 genomes]
rs72811205	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900689	0.83[AFR][1000 genomes]
rs7914814	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv551924	chr10:94212742-94290484	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv551925	chr10:94224165-94288429	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv1802816	chr10:94232247-94294291	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	esv3335661	chr10:94283272-94285320	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94244000-94303000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:94250200-94289400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:94250200-94295200	Weak transcription	Pancreas	Pancrea
4	chr10:94250200-94297200	Weak transcription	Brain Germinal Matrix	brain
5	chr10:94250200-94313800	Weak transcription	Brain Substantia Nigra	brain
6	chr10:94250400-94301000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:94250400-94307400	Weak transcription	Spleen	Spleen
8	chr10:94252600-94302200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:94257600-94289400	Weak transcription	Right Ventricle	heart
10	chr10:94259400-94289000	Weak transcription	NH-A	brain
11	chr10:94260000-94296800	Weak transcription	Esophagus	oesophagus
12	chr10:94262000-94289200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:94262000-94297600	Weak transcription	Psoas Muscle	Psoas
14	chr10:94262000-94307400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:94264200-94295000	Weak transcription	Small Intestine	intestine
16	chr10:94265800-94290400	Weak transcription	Osteobl	bone
17	chr10:94267600-94297400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr10:94267600-94314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:94267800-94328800	Weak transcription	Fetal Heart	heart
20	chr10:94268000-94313800	Weak transcription	Colon Smooth Muscle	Colon
21	chr10:94268000-94313800	Weak transcription	NHLF	lung
22	chr10:94268600-94290800	Weak transcription	Fetal Lung	lung
23	chr10:94268600-94295200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:94268600-94300000	Weak transcription	Colonic Mucosa	Colon
25	chr10:94268800-94290000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:94269000-94290200	Weak transcription	Fetal Kidney	kidney
27	chr10:94269400-94314000	Weak transcription	Aorta	Aorta
28	chr10:94269600-94287400	Weak transcription	Fetal Intestine Small	intestine
29	chr10:94269600-94289200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:94269600-94289200	Weak transcription	Fetal Stomach	stomach
31	chr10:94269600-94314000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:94269800-94290000	Weak transcription	Ovary	ovary
33	chr10:94269800-94295000	Weak transcription	Lung	lung
34	chr10:94270000-94289200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:94270200-94289400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:94272000-94286200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr10:94272000-94288800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr10:94272000-94317200	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr10:94272200-94288600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr10:94272200-94288800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr10:94272200-94288800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr10:94272200-94289000	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr10:94272200-94289000	Weak transcription	NHEK	skin
44	chr10:94272200-94289200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr10:94272200-94289200	Weak transcription	Left Ventricle	heart
46	chr10:94272200-94289400	Weak transcription	Fetal Muscle Leg	muscle
47	chr10:94272200-94289400	Weak transcription	HepG2	liver
48	chr10:94272200-94289600	Weak transcription	Fetal Thymus	thymus
49	chr10:94272200-94289600	Weak transcription	Thymus	Thymus
50	chr10:94272200-94291000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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