Variant report

Variant	rs10786050
Chromosome Location	chr10:94367230-94367231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94352566..94354607-chr10:94365901..94367926,3	MCF-7	breast:
2	chr10:94362820..94365459-chr10:94365788..94367385,2	K562	blood:

Variant related genes	Relation type
ENSG00000138160	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10736068	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10736069	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882091	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882094	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11187064	0.85[YRI][hapmap]
rs11187065	0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs11187067	0.83[AFR][1000 genomes]
rs11187069	0.81[AFR][1000 genomes]
rs11187073	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs12358677	0.83[AFR][1000 genomes]
rs17445328	0.85[YRI][hapmap]
rs2421941	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35616984	0.81[AFR][1000 genomes]
rs4646953	0.90[AFR][1000 genomes]
rs4933734	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56289118	0.83[AFR][1000 genomes]
rs61861406	0.83[AFR][1000 genomes]
rs6583822	0.88[EUR][1000 genomes]
rs6583824	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6583827	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6583830	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7071905	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7092522	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7096101	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894183	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7900689	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7914814	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9420589	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94353600-94403800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94354000-94372000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:94354000-94420000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:94354200-94369000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:94354200-94416000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:94354800-94373400	Weak transcription	Fetal Intestine Small	intestine
7	chr10:94355000-94368200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:94355000-94372200	Weak transcription	HSMM	muscle
9	chr10:94355200-94372000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:94355600-94368400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr10:94355800-94369000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:94355800-94369200	Weak transcription	NH-A	brain
13	chr10:94355800-94369400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr10:94356000-94367600	Weak transcription	Fetal Stomach	stomach
15	chr10:94356800-94385600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:94358600-94372200	Weak transcription	K562	blood
17	chr10:94361800-94372600	Weak transcription	NHEK	skin
18	chr10:94362000-94372600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:94362000-94372600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:94362000-94381200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:94362000-94389400	Weak transcription	NHLF	lung
22	chr10:94362000-94399800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:94362400-94368600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:94362400-94371800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:94362600-94376400	Weak transcription	Fetal Lung	lung
26	chr10:94362800-94372200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:94363600-94410200	Weak transcription	Fetal Kidney	kidney
28	chr10:94364000-94390600	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr10:94364000-94416400	Strong transcription	Dnd41	blood
30	chr10:94364200-94417400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr10:94364400-94368400	Weak transcription	HMEC	breast
32	chr10:94364400-94403800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:94364400-94415200	Weak transcription	Fetal Heart	heart
34	chr10:94364600-94369200	Weak transcription	Osteobl	bone
35	chr10:94364800-94368400	Weak transcription	NHDF-Ad	bronchial
36	chr10:94364800-94383600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:94365000-94368600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:94365000-94372000	Weak transcription	Thymus	Thymus
39	chr10:94365000-94385400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:94365000-94395200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr10:94365200-94371200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr10:94365200-94372200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr10:94365600-94367400	Strong transcription	GM12878-XiMat	blood
44	chr10:94365600-94369400	Strong transcription	HUVEC	blood vessel
45	chr10:94365600-94379400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:94365600-94390600	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr10:94365600-94415600	Strong transcription	Fetal Thymus	thymus
48	chr10:94365800-94370000	Strong transcription	HepG2	liver
49	chr10:94365800-94382600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr10:94365800-94390400	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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