Variant report

Variant	rs6583827
Chromosome Location	chr10:94358023-94358024
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr10:94357943-94358133	K562	blood:	n/a	n/a
2	KAP1	chr10:94357978-94358447	HEK293	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94351268..94354735-chr10:94355145..94359396,3	K562	blood:
2	chr10:94350490..94352733-chr10:94357545..94360225,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184111	TF binding region
ENSG00000138160	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10736068	0.82[EUR][1000 genomes]
rs10736069	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10786050	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882091	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882094	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11187065	0.83[AFR][1000 genomes]
rs11187067	0.83[AFR][1000 genomes]
rs11187069	0.81[AFR][1000 genomes]
rs11187073	0.81[AFR][1000 genomes]
rs12358677	0.83[AFR][1000 genomes]
rs2421941	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35616984	0.81[AFR][1000 genomes]
rs4646953	0.90[AFR][1000 genomes]
rs4933734	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56289118	0.83[AFR][1000 genomes]
rs61861406	0.83[AFR][1000 genomes]
rs6583822	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6583824	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6583830	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7071905	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7092522	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7096101	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7894183	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7900689	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7914814	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9420589	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94353600-94403800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94354000-94362000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr10:94354000-94372000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:94354000-94420000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:94354200-94369000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:94354200-94416000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:94354600-94361400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:94354600-94361600	Weak transcription	Fetal Lung	lung
9	chr10:94354800-94361400	Weak transcription	HMEC	breast
10	chr10:94354800-94366000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:94354800-94366000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:94354800-94373400	Weak transcription	Fetal Intestine Small	intestine
13	chr10:94355000-94358400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:94355000-94361200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:94355000-94364000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:94355000-94364000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:94355000-94366000	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:94355000-94368200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:94355000-94372200	Weak transcription	HSMM	muscle
20	chr10:94355200-94361800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:94355200-94372000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr10:94355400-94365600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:94355600-94361600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:94355600-94361600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:94355600-94362800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:94355600-94366000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr10:94355600-94368400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr10:94355800-94361200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:94355800-94369000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr10:94355800-94369200	Weak transcription	NH-A	brain
31	chr10:94355800-94369400	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr10:94356000-94358800	Enhancers	HepG2	liver
33	chr10:94356000-94367600	Weak transcription	Fetal Stomach	stomach
34	chr10:94356600-94361600	Weak transcription	Osteobl	bone
35	chr10:94356800-94361200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:94356800-94361400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:94356800-94361800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr10:94356800-94361800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:94356800-94366800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr10:94356800-94385600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr10:94357000-94358600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:94357000-94358600	Enhancers	K562	blood
43	chr10:94357000-94360200	Weak transcription	Fetal Thymus	thymus
44	chr10:94357000-94361200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr10:94357000-94361200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr10:94357000-94361200	Weak transcription	HUVEC	blood vessel
47	chr10:94357000-94361400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:94357000-94361400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr10:94357000-94361400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:94357000-94361400	Weak transcription	Thymus	Thymus

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