Variant report

Variant	rs10736069
Chromosome Location	chr10:94395393-94395394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10736068	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10786050	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882091	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882094	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187064	0.82[YRI][hapmap]
rs11187065	0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs11187067	0.83[AFR][1000 genomes]
rs11187069	0.81[AFR][1000 genomes]
rs11187073	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs12358677	0.83[AFR][1000 genomes]
rs17445328	0.83[YRI][hapmap]
rs2421941	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35616984	0.81[AFR][1000 genomes]
rs4646953	0.90[AFR][1000 genomes]
rs4933734	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56289118	0.83[AFR][1000 genomes]
rs61861406	0.83[AFR][1000 genomes]
rs6583822	0.87[EUR][1000 genomes]
rs6583824	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6583827	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6583830	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7071905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7078243	0.81[CEU][hapmap]
rs7092522	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7096101	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7894183	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7900689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7914814	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9420589	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv1799475	chr10:94392728-94450386	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	esv1801116	chr10:94392728-94450386	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	esv1839570	chr10:94392728-94450386	Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	esv1837497	chr10:94392728-94452430	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	esv1794949	chr10:94392728-94465559	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94353600-94403800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94354000-94420000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:94354200-94416000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:94362000-94399800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:94363600-94410200	Weak transcription	Fetal Kidney	kidney
6	chr10:94364000-94416400	Strong transcription	Dnd41	blood
7	chr10:94364200-94417400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr10:94364400-94403800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:94364400-94415200	Weak transcription	Fetal Heart	heart
10	chr10:94365600-94415600	Strong transcription	Fetal Thymus	thymus
11	chr10:94366000-94409600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:94367200-94411400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr10:94367400-94399600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:94371000-94408600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:94371000-94414600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr10:94371000-94417000	Weak transcription	Primary B cells from cord blood	blood
17	chr10:94371800-94408800	Weak transcription	Fetal Brain Female	brain
18	chr10:94373600-94399800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:94374800-94410400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:94374800-94416000	Weak transcription	Placenta	Placenta
21	chr10:94374800-94418600	Weak transcription	Brain Germinal Matrix	brain
22	chr10:94376200-94403600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:94379400-94401400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:94382000-94396000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:94382000-94399000	Weak transcription	Fetal Intestine Small	intestine
26	chr10:94383000-94414600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr10:94384000-94414200	Weak transcription	Primary T cells from cord blood	blood
28	chr10:94384000-94416400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:94384400-94403800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:94387400-94396200	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr10:94389000-94416400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:94389800-94404800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:94390000-94397000	Weak transcription	HMEC	breast
34	chr10:94390000-94403800	Weak transcription	NHLF	lung
35	chr10:94390200-94400000	Weak transcription	Thymus	Thymus
36	chr10:94391200-94401000	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr10:94391400-94396200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr10:94391400-94396600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr10:94391400-94402200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:94391400-94402200	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr10:94391400-94415000	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr10:94391400-94415400	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr10:94391400-94415400	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr10:94391400-94415400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr10:94391400-94415400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:94391400-94415800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:94391600-94396200	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr10:94391600-94396200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:94391600-94396600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:94391800-94397000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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