Variant report

Variant	rs11187014
Chromosome Location	chr10:94227838-94227839
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10882068	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11186997	0.89[AMR][1000 genomes]
rs11187011	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11187020	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12242504	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243622	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12245118	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12249976	0.91[YRI][hapmap];0.94[AFR][1000 genomes]
rs73323661	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7920976	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs913648	0.85[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv551924	chr10:94212742-94290484	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv551925	chr10:94224165-94288429	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94208400-94276800	Weak transcription	Stomach Mucosa	stomach
2	chr10:94209400-94231400	Strong transcription	Duodenum Mucosa	Duodenum
3	chr10:94209800-94234400	Weak transcription	Fetal Heart	heart
4	chr10:94210000-94243000	Weak transcription	Fetal Brain Female	brain
5	chr10:94210400-94231800	Strong transcription	Adipose Nuclei	Adipose
6	chr10:94210400-94235600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:94210400-94239200	Weak transcription	Fetal Brain Male	brain
8	chr10:94210600-94231800	Strong transcription	Liver	Liver
9	chr10:94210600-94250000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:94211000-94235600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:94211400-94231800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:94211400-94235600	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr10:94211400-94235800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:94211400-94253200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:94211800-94230600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:94212000-94232400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:94212400-94233800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:94212800-94270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr10:94214200-94230400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:94214400-94234200	Strong transcription	Fetal Stomach	stomach
21	chr10:94217000-94228600	Weak transcription	Esophagus	oesophagus
22	chr10:94217200-94232400	Weak transcription	Small Intestine	intestine
23	chr10:94217400-94251800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:94217600-94270200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr10:94217800-94229200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:94217800-94230400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr10:94217800-94245600	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr10:94218000-94245400	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr10:94218200-94251800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr10:94218400-94230200	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr10:94218400-94237800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:94218600-94230400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:94218600-94230400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:94219000-94229200	Strong transcription	Placenta	Placenta
35	chr10:94219000-94231200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr10:94219200-94230200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr10:94219600-94230200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr10:94219600-94230200	Strong transcription	Left Ventricle	heart
39	chr10:94220000-94232000	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr10:94220200-94230200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:94220200-94230200	Strong transcription	Fetal Muscle Leg	muscle
42	chr10:94220200-94231200	Strong transcription	Stomach Smooth Muscle	stomach
43	chr10:94221800-94230000	Strong transcription	Thymus	Thymus
44	chr10:94221800-94230200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:94222200-94230000	Strong transcription	Fetal Intestine Large	intestine
46	chr10:94222200-94230800	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr10:94222400-94230000	Strong transcription	Fetal Muscle Trunk	muscle
48	chr10:94222400-94231400	Strong transcription	Primary T cells from cord blood	blood
49	chr10:94222600-94243200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:94222800-94250800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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