Variant report

Variant	rs11187020
Chromosome Location	chr10:94248750-94248751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10882068	0.91[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.92[AFR][1000 genomes]
rs11186997	0.89[AMR][1000 genomes]
rs11187011	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11187014	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11187045	1.00[MEX][hapmap]
rs12242504	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243622	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12245118	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12249976	0.86[AFR][1000 genomes]
rs2497317	0.81[LWK][hapmap];1.00[MEX][hapmap]
rs6583808	1.00[MEX][hapmap]
rs73323661	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7909334	1.00[MEX][hapmap]
rs7920976	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs913648	1.00[MEX][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv551924	chr10:94212742-94290484	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv551925	chr10:94224165-94288429	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv1802816	chr10:94232247-94294291	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94208400-94276800	Weak transcription	Stomach Mucosa	stomach
2	chr10:94210600-94250000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:94211400-94253200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:94212800-94270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:94217400-94251800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:94217600-94270200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:94218200-94251800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:94222800-94250800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:94223200-94252600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:94225400-94248800	Weak transcription	Brain Germinal Matrix	brain
11	chr10:94225600-94252600	Weak transcription	Fetal Kidney	kidney
12	chr10:94227400-94251200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:94230000-94276400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:94230400-94276400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:94230600-94249000	Weak transcription	NHLF	lung
16	chr10:94230600-94249400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr10:94232800-94251200	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr10:94233200-94251000	Strong transcription	Liver	Liver
19	chr10:94233200-94254000	Strong transcription	Adipose Nuclei	Adipose
20	chr10:94233600-94250600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:94233800-94251200	Strong transcription	Left Ventricle	heart
22	chr10:94236400-94253000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:94236600-94251000	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr10:94236800-94248800	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:94237200-94251200	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr10:94237400-94250400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:94237800-94250400	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:94237800-94251000	Strong transcription	Brain Anterior Caudate	brain
29	chr10:94238000-94254000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr10:94239600-94248800	Weak transcription	NH-A	brain
31	chr10:94239600-94252400	Weak transcription	HMEC	breast
32	chr10:94239600-94280400	Weak transcription	Fetal Brain Male	brain
33	chr10:94240200-94265400	Weak transcription	Fetal Heart	heart
34	chr10:94241000-94250600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:94242400-94254200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr10:94242800-94250400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:94242800-94250600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:94242800-94250600	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr10:94242800-94250600	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:94242800-94253000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr10:94243000-94249000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:94243000-94250200	Strong transcription	Brain Hippocampus Middle	brain
43	chr10:94243000-94250600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:94243000-94250600	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr10:94243000-94250600	Strong transcription	Fetal Muscle Trunk	muscle
46	chr10:94243000-94250600	Strong transcription	Fetal Thymus	thymus
47	chr10:94243000-94250600	Strong transcription	Stomach Smooth Muscle	stomach
48	chr10:94243000-94251000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr10:94243000-94251000	Strong transcription	Duodenum Mucosa	Duodenum
50	chr10:94243000-94251200	Strong transcription	HUES6 Cell Line	embryonic stem cell

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