Variant report

Variant	rs12245118
Chromosome Location	chr10:94234755-94234756
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94231625..94235383-chr10:94350163..94352674,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10882068	0.94[AFR][1000 genomes]
rs11186998	0.90[AMR][1000 genomes]
rs11187011	0.89[AMR][1000 genomes]
rs11187014	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11187020	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12242504	0.89[AMR][1000 genomes]
rs12243622	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249976	1.00[AFR][1000 genomes]
rs7086558	0.83[AFR][1000 genomes]
rs73323661	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7920976	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs913648	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv551924	chr10:94212742-94290484	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv551925	chr10:94224165-94288429	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv1802816	chr10:94232247-94294291	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94208400-94276800	Weak transcription	Stomach Mucosa	stomach
2	chr10:94210000-94243000	Weak transcription	Fetal Brain Female	brain
3	chr10:94210400-94235600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:94210400-94239200	Weak transcription	Fetal Brain Male	brain
5	chr10:94210600-94250000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:94211000-94235600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:94211400-94235600	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr10:94211400-94235800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:94211400-94253200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:94212800-94270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr10:94217400-94251800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:94217600-94270200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:94217800-94245600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr10:94218000-94245400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr10:94218200-94251800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:94218400-94237800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:94222600-94243200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:94222800-94250800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:94223200-94252600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr10:94224600-94238800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:94225400-94248800	Weak transcription	Brain Germinal Matrix	brain
22	chr10:94225600-94238600	Weak transcription	NHEK	skin
23	chr10:94225600-94248400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:94225600-94252600	Weak transcription	Fetal Kidney	kidney
25	chr10:94225800-94239000	Weak transcription	Right Ventricle	heart
26	chr10:94225800-94239200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr10:94226000-94245000	Weak transcription	K562	blood
28	chr10:94227400-94251200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:94227800-94243000	Weak transcription	Colonic Mucosa	Colon
30	chr10:94228000-94242800	Weak transcription	NHDF-Ad	bronchial
31	chr10:94228800-94238400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr10:94229000-94235000	Weak transcription	HSMMtube	muscle
33	chr10:94229200-94238000	Weak transcription	Osteobl	bone
34	chr10:94229200-94246400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr10:94229800-94238400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr10:94230000-94235000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:94230000-94235000	Weak transcription	Colon Smooth Muscle	Colon
38	chr10:94230000-94237800	Weak transcription	Brain Anterior Caudate	brain
39	chr10:94230000-94243200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr10:94230000-94276400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr10:94230200-94235000	Weak transcription	Placenta	Placenta
42	chr10:94230200-94235000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr10:94230200-94236600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:94230200-94236600	Weak transcription	Aorta	Aorta
45	chr10:94230200-94236600	Weak transcription	Esophagus	oesophagus
46	chr10:94230200-94237200	Weak transcription	HepG2	liver
47	chr10:94230200-94237400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr10:94230200-94237600	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr10:94230200-94238000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr10:94230200-94238000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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