Variant report

Variant	rs11187111
Chromosome Location	chr10:94400509-94400510
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94351413..94354173-chr10:94398677..94401059,2	MCF-7	breast:
2	chr10:94332198..94334291-chr10:94398455..94400999,2	MCF-7	breast:
3	chr10:94332941..94334794-chr10:94399846..94401680,2	K562	blood:

Variant related genes	Relation type
ENSG00000138160	Chromatin interaction
ENSG00000119912	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10082524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11187101	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11187109	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11187110	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11187112	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11187116	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11187118	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11187126	1.00[CEU][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11187131	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11187132	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12240557	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12243009	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12247024	1.00[CEU][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12251379	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12252836	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12254289	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12254474	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12256435	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12257072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12258463	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262063	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262390	1.00[CEU][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12263166	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2275729	0.84[YRI][hapmap]
rs2497311	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv1799475	chr10:94392728-94450386	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	esv1801116	chr10:94392728-94450386	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	esv1839570	chr10:94392728-94450386	Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	esv1837497	chr10:94392728-94452430	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	esv1794949	chr10:94392728-94465559	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv825517	chr10:94397149-94472509	Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94353600-94403800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94354000-94420000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:94354200-94416000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:94363600-94410200	Weak transcription	Fetal Kidney	kidney
5	chr10:94364000-94416400	Strong transcription	Dnd41	blood
6	chr10:94364200-94417400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr10:94364400-94403800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:94364400-94415200	Weak transcription	Fetal Heart	heart
9	chr10:94365600-94415600	Strong transcription	Fetal Thymus	thymus
10	chr10:94366000-94409600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:94367200-94411400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:94371000-94408600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:94371000-94414600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:94371000-94417000	Weak transcription	Primary B cells from cord blood	blood
15	chr10:94371800-94408800	Weak transcription	Fetal Brain Female	brain
16	chr10:94374800-94410400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:94374800-94416000	Weak transcription	Placenta	Placenta
18	chr10:94374800-94418600	Weak transcription	Brain Germinal Matrix	brain
19	chr10:94376200-94403600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:94379400-94401400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:94383000-94414600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr10:94384000-94414200	Weak transcription	Primary T cells from cord blood	blood
23	chr10:94384000-94416400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:94384400-94403800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:94389000-94416400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:94389800-94404800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:94390000-94403800	Weak transcription	NHLF	lung
28	chr10:94391200-94401000	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr10:94391400-94402200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:94391400-94402200	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr10:94391400-94415000	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr10:94391400-94415400	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:94391400-94415400	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr10:94391400-94415400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr10:94391400-94415400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:94391400-94415800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr10:94391800-94402600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:94392000-94415400	Weak transcription	Small Intestine	intestine
39	chr10:94392400-94406600	Weak transcription	NH-A	brain
40	chr10:94395000-94414800	Weak transcription	Fetal Brain Male	brain
41	chr10:94395400-94403800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:94395400-94411400	Weak transcription	Fetal Intestine Large	intestine
43	chr10:94395800-94400600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:94396200-94412200	Weak transcription	Fetal Muscle Leg	muscle
45	chr10:94396400-94412600	Weak transcription	Liver	Liver
46	chr10:94396400-94418200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:94397000-94402200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr10:94397000-94402200	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr10:94397600-94402600	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr10:94397600-94403800	Weak transcription	K562	blood

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