Variant report

Variant	rs12252836
Chromosome Location	chr10:94376328-94376329
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10082524	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11187101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11187109	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11187110	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11187111	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11187112	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11187116	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11187118	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11187126	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11187131	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11187132	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12240557	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12243009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12247024	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12251379	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12254289	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12254474	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12256435	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12257072	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12258463	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262063	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262390	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12263166	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94353600-94403800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94354000-94420000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:94354200-94416000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:94356800-94385600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:94362000-94381200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:94362000-94389400	Weak transcription	NHLF	lung
7	chr10:94362000-94399800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:94362600-94376400	Weak transcription	Fetal Lung	lung
9	chr10:94363600-94410200	Weak transcription	Fetal Kidney	kidney
10	chr10:94364000-94390600	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:94364000-94416400	Strong transcription	Dnd41	blood
12	chr10:94364200-94417400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr10:94364400-94403800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:94364400-94415200	Weak transcription	Fetal Heart	heart
15	chr10:94364800-94383600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:94365000-94385400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:94365000-94395200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:94365600-94379400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:94365600-94390600	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:94365600-94415600	Strong transcription	Fetal Thymus	thymus
21	chr10:94365800-94382600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr10:94365800-94390400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:94366000-94386400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:94366000-94390600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:94366000-94409600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:94366200-94390600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:94366400-94388600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:94366800-94390600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr10:94367200-94411400	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr10:94367400-94394000	Weak transcription	Fetal Intestine Large	intestine
31	chr10:94367400-94399600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr10:94368600-94386200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:94369200-94377400	Strong transcription	GM12878-XiMat	blood
34	chr10:94369400-94376400	Weak transcription	NHDF-Ad	bronchial
35	chr10:94371000-94408600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr10:94371000-94414600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr10:94371000-94417000	Weak transcription	Primary B cells from cord blood	blood
38	chr10:94371200-94386000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:94371400-94376400	Strong transcription	Fetal Muscle Leg	muscle
40	chr10:94371600-94390600	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr10:94371800-94379400	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr10:94371800-94379600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:94371800-94384400	Strong transcription	HepG2	liver
44	chr10:94371800-94408800	Weak transcription	Fetal Brain Female	brain
45	chr10:94372000-94379400	Strong transcription	A549	lung
46	chr10:94372200-94378000	Strong transcription	HMEC	breast
47	chr10:94372200-94378800	Strong transcription	HSMM	muscle
48	chr10:94372600-94377800	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr10:94372600-94380400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:94372600-94384200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links