Variant report

Variant	rs12256435
Chromosome Location	chr10:94353278-94353279
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:94351268..94354735-chr10:94355145..94359396,3	K562	blood:
2	chr10:94330286..94336827-chr10:94349891..94354260,15	K562	blood:
3	chr10:94351725..94353301-chr10:94589609..94592418,2	K562	blood:
4	chr10:94327650..94337583-chr10:94349444..94356782,22	K562	blood:
5	chr10:94349285..94352035-chr10:94353107..94354647,2	K562	blood:
6	chr10:94351156..94354361-chr10:94606648..94609927,3	MCF-7	breast:
7	chr10:94349533..94356622-chr10:94447410..94453498,11	K562	blood:
8	chr10:94352936..94353453-chr19:36630960..36631661,2	Hela-S3	cervix:
9	chr10:94352936..94353466-chr17:74733021..74733712,2	Hela-S3	cervix:
10	chr10:94349533..94354628-chr10:94448059..94453493,12	K562	blood:
11	chr10:94332262..94336114-chr10:94349834..94354042,11	MCF-7	breast:
12	chr10:94353254..94355165-chr10:94355229..94358982,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000119912	Chromatin interaction
ENSG00000092931	Chromatin interaction
ENSG00000152804	Chromatin interaction
ENSG00000138190	Chromatin interaction
ENSG00000184111	Chromatin interaction
ENSG00000161547	Chromatin interaction
ENSG00000126247	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10082524	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11187101	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11187109	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11187110	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11187111	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11187112	1.00[CEU][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11187116	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11187118	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11187126	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11187131	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11187132	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12240557	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12243009	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12247024	1.00[CEU][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12251379	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12252836	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12254289	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12254474	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12257072	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12258463	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262063	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262390	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12263166	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2275729	0.81[MKK][hapmap];0.84[YRI][hapmap]
rs2497311	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94350600-94353600	Active TSS	Right Atrium	heart
2	chr10:94350600-94354400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:94350600-94354800	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr10:94350600-94355000	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr10:94350600-94355200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:94350600-94355400	Active TSS	GM12878-XiMat	blood
7	chr10:94350600-94355600	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr10:94350600-94355800	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr10:94350800-94353400	Active TSS	Psoas Muscle	Psoas
10	chr10:94350800-94353800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:94350800-94354000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr10:94350800-94354800	Active TSS	Fetal Brain Female	brain
13	chr10:94350800-94355000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:94350800-94355600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:94350800-94355800	Active TSS	Thymus	Thymus
16	chr10:94351000-94353400	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr10:94351000-94353400	Active TSS	Left Ventricle	heart
18	chr10:94351000-94353600	Active TSS	Brain Anterior Caudate	brain
19	chr10:94351000-94354200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:94351000-94354200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr10:94351000-94354800	Active TSS	H1 Cell Line	embryonic stem cell
22	chr10:94351000-94354800	Active TSS	HSMM	muscle
23	chr10:94351000-94355000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:94351000-94355200	Active TSS	H9 Cell Line	embryonic stem cell
25	chr10:94351000-94355600	Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr10:94351000-94356600	Active TSS	K562	blood
27	chr10:94351200-94353400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:94351200-94353400	Active TSS	Colon Smooth Muscle	Colon
29	chr10:94351200-94353400	Active TSS	Fetal Lung	lung
30	chr10:94351200-94353400	Active TSS	Ovary	ovary
31	chr10:94351200-94353400	Active TSS	Pancreas	Pancrea
32	chr10:94351200-94353800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:94351200-94353800	Active TSS	HSMMtube	muscle
34	chr10:94351200-94354200	Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr10:94351200-94354200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:94351200-94354200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:94351200-94354400	Active TSS	NHDF-Ad	bronchial
38	chr10:94351200-94354600	Active TSS	Duodenum Mucosa	Duodenum
39	chr10:94351200-94354600	Active TSS	Fetal Stomach	stomach
40	chr10:94351200-94354800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:94351200-94354800	Active TSS	Fetal Kidney	kidney
42	chr10:94351200-94354800	Active TSS	A549	lung
43	chr10:94351200-94355000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:94351200-94355000	Active TSS	Fetal Intestine Large	intestine
45	chr10:94351200-94355600	Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr10:94351400-94353400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:94351400-94353400	Active TSS	Sigmoid Colon	Sigmoid Colon
48	chr10:94351400-94353800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:94351400-94354000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr10:94351400-94354400	Active TSS	NHEK	skin

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