Variant report

Variant	rs11187663
Chromosome Location	chr10:95536709-95536710
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:95536466-95537310	H1-neurons	neurons:	n/a	n/a
2	JUND	chr10:95536661-95537285	T-47D	breast:	n/a	n/a
3	GATA3	chr10:95536586-95537407	MCF-7	breast:	n/a	n/a
4	GATA3	chr10:95536666-95537072	T-47D	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95522144..95525198-chr10:95532040..95536746,5	MCF-7	breast:

Variant related genes	Relation type
LGI1	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11187651	1.00[AFR][1000 genomes]
rs11187656	1.00[AFR][1000 genomes]
rs11187657	0.97[AFR][1000 genomes]
rs11187658	1.00[AFR][1000 genomes]
rs11187659	1.00[AFR][1000 genomes]
rs11187660	1.00[AFR][1000 genomes]
rs11187661	1.00[AFR][1000 genomes]
rs11187662	1.00[AFR][1000 genomes]
rs12250802	0.97[AFR][1000 genomes]
rs12260839	0.97[AFR][1000 genomes]
rs12264757	1.00[AFR][1000 genomes]
rs12267512	0.97[AFR][1000 genomes]
rs28754359	1.00[AFR][1000 genomes]
rs2901693	0.97[AFR][1000 genomes]
rs56154309	1.00[AFR][1000 genomes]
rs59067238	0.97[AFR][1000 genomes]
rs59353452	0.97[AFR][1000 genomes]
rs7069172	0.82[AFR][1000 genomes]
rs74150344	1.00[AFR][1000 genomes]
rs74150345	1.00[AFR][1000 genomes]
rs7909086	0.97[AFR][1000 genomes]
rs9651440	1.00[AFR][1000 genomes]
rs9651441	1.00[AFR][1000 genomes]
rs9651442	1.00[AFR][1000 genomes]
rs9651443	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817213	chr10:95531345-95561397	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1846291	chr10:95531345-95561397	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1840973	chr10:95534265-95552953	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95523200-95541800	Weak transcription	Brain Substantia Nigra	brain
2	chr10:95528600-95559600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:95530000-95554800	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:95530400-95549400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:95530600-95558000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:95533800-95536800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:95534000-95538000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:95535000-95554600	Weak transcription	Brain Anterior Caudate	brain
9	chr10:95536000-95537400	Enhancers	Liver	Liver
10	chr10:95536200-95536800	Weak transcription	A549	lung
11	chr10:95536400-95536800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr10:95536400-95537000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:95536400-95537200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:95536400-95537200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:95536400-95537200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:95536400-95537600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:95536400-95538600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:95536600-95536800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr10:95536600-95536800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:95536600-95536800	Bivalent Enhancer	HSMM	muscle
21	chr10:95536600-95537000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr10:95536600-95537000	Enhancers	H9 Cell Line	embryonic stem cell
23	chr10:95536600-95537000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:95536600-95537000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr10:95536600-95537000	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr10:95536600-95537000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:95536600-95537200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:95536600-95537200	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr10:95536600-95537200	Enhancers	Brain Cingulate Gyrus	brain
30	chr10:95536600-95537200	Enhancers	HSMMtube	muscle
31	chr10:95536600-95537200	Bivalent Enhancer	Osteobl	bone

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