Variant report

Variant	rs7909086
Chromosome Location	chr10:95533374-95533375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95522144..95525198-chr10:95532040..95536746,5	MCF-7	breast:
2	chr10:95500956..95502830-chr10:95532410..95535130,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11187651	0.97[AFR][1000 genomes]
rs11187656	0.87[YRI][hapmap];0.97[AFR][1000 genomes]
rs11187657	0.95[AFR][1000 genomes]
rs11187658	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs11187659	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs11187660	0.97[AFR][1000 genomes]
rs11187661	0.97[AFR][1000 genomes]
rs11187662	0.97[AFR][1000 genomes]
rs11187663	0.97[AFR][1000 genomes]
rs12250802	1.00[AFR][1000 genomes]
rs12260839	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12264757	0.97[AFR][1000 genomes]
rs12267512	0.95[AFR][1000 genomes]
rs28754359	0.97[AFR][1000 genomes]
rs2901693	1.00[AFR][1000 genomes]
rs56154309	0.97[AFR][1000 genomes]
rs59067238	1.00[AFR][1000 genomes]
rs59353452	0.95[AFR][1000 genomes]
rs7069172	0.80[AFR][1000 genomes]
rs74150344	0.97[AFR][1000 genomes]
rs74150345	0.97[AFR][1000 genomes]
rs9651440	0.97[AFR][1000 genomes]
rs9651441	0.97[AFR][1000 genomes]
rs9651442	0.97[AFR][1000 genomes]
rs9651443	1.00[YRI][hapmap];0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817213	chr10:95531345-95561397	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1846291	chr10:95531345-95561397	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95520800-95536400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:95521200-95533600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:95523200-95541800	Weak transcription	Brain Substantia Nigra	brain
4	chr10:95528200-95535200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:95528200-95536600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:95528600-95559600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:95530000-95536600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:95530000-95554800	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:95530400-95533400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:95530400-95533400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:95530400-95549400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:95530600-95536600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr10:95530600-95558000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:95531200-95535000	Weak transcription	A549	lung
15	chr10:95533000-95533800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr10:95533000-95533800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr10:95533000-95534000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:95533000-95534000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:95533000-95534000	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr10:95533000-95534000	Enhancers	Adipose Nuclei	Adipose
21	chr10:95533000-95534000	Flanking Active TSS	Liver	Liver
22	chr10:95533000-95534200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr10:95533000-95535000	Enhancers	Brain Anterior Caudate	brain

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