Variant report

Variant	rs28754359
Chromosome Location	chr10:95538284-95538285
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11187651	1.00[AFR][1000 genomes]
rs11187656	1.00[AFR][1000 genomes]
rs11187657	0.97[AFR][1000 genomes]
rs11187658	1.00[AFR][1000 genomes]
rs11187659	1.00[AFR][1000 genomes]
rs11187660	1.00[AFR][1000 genomes]
rs11187661	1.00[AFR][1000 genomes]
rs11187662	1.00[AFR][1000 genomes]
rs11187663	1.00[AFR][1000 genomes]
rs12250802	0.97[AFR][1000 genomes]
rs12260839	0.97[AFR][1000 genomes]
rs12264757	1.00[AFR][1000 genomes]
rs12267512	0.97[AFR][1000 genomes]
rs2901693	0.97[AFR][1000 genomes]
rs56154309	1.00[AFR][1000 genomes]
rs59067238	0.97[AFR][1000 genomes]
rs59353452	0.97[AFR][1000 genomes]
rs7069172	0.82[AFR][1000 genomes]
rs74150344	1.00[AFR][1000 genomes]
rs74150345	1.00[AFR][1000 genomes]
rs7909086	0.97[AFR][1000 genomes]
rs9651440	1.00[AFR][1000 genomes]
rs9651441	1.00[AFR][1000 genomes]
rs9651442	1.00[AFR][1000 genomes]
rs9651443	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817213	chr10:95531345-95561397	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1846291	chr10:95531345-95561397	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1840973	chr10:95534265-95552953	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95523200-95541800	Weak transcription	Brain Substantia Nigra	brain
2	chr10:95528600-95559600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:95530000-95554800	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:95530400-95549400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:95530600-95558000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:95535000-95554600	Weak transcription	Brain Anterior Caudate	brain
7	chr10:95536400-95538600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:95537000-95538400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:95537000-95546600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:95537200-95539800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:95537800-95538400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:95538000-95538800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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