Variant report

Variant	rs11189171
Chromosome Location	chr10:99133954-99133955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11189151	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189169	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189205	1.00[EUR][1000 genomes]
rs11814749	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12248859	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12250066	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12256733	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12257067	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12269603	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61731893	1.00[EUR][1000 genomes]
rs6584124	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7074639	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs915197	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9663668	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv831952	chr10:98998344-99145924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv467437	chr10:99115683-99167436	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv552023	chr10:99115683-99167436	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv467438	chr10:99126249-99173870	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv552024	chr10:99126249-99173870	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv825535	chr10:99133673-99138975	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99109000-99157800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:99109600-99157800	Strong transcription	Fetal Stomach	stomach
3	chr10:99110800-99139800	Weak transcription	Stomach Mucosa	stomach
4	chr10:99111600-99141800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:99113200-99135400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:99113400-99158600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:99113800-99138800	Strong transcription	Fetal Intestine Small	intestine
8	chr10:99113800-99158800	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:99113800-99159800	Weak transcription	Fetal Brain Male	brain
10	chr10:99114400-99135000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:99114600-99159000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:99115200-99134200	Strong transcription	Gastric	stomach
13	chr10:99115200-99136000	Strong transcription	Fetal Brain Female	brain
14	chr10:99115200-99136800	Strong transcription	Dnd41	blood
15	chr10:99115200-99145800	Strong transcription	H9 Cell Line	embryonic stem cell
16	chr10:99115200-99146800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:99115400-99134200	Strong transcription	Pancreas	Pancrea
18	chr10:99115400-99157600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:99115600-99134000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:99115600-99141600	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr10:99115600-99159800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr10:99115800-99157800	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:99115800-99157800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:99115800-99158600	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr10:99116000-99134000	Strong transcription	Brain Germinal Matrix	brain
26	chr10:99116000-99136800	Strong transcription	Primary T cells from cord blood	blood
27	chr10:99116800-99135600	Strong transcription	Brain Anterior Caudate	brain
28	chr10:99117000-99134200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:99117400-99138800	Strong transcription	Fetal Intestine Large	intestine
30	chr10:99118000-99159800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr10:99118200-99134200	Strong transcription	Right Ventricle	heart
32	chr10:99121000-99157600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr10:99121000-99159600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr10:99121200-99134000	Strong transcription	NHEK	skin
35	chr10:99121200-99159600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:99122000-99141600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:99122200-99134200	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr10:99122200-99136800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:99122400-99134200	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr10:99122400-99144000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr10:99122400-99145800	Strong transcription	Liver	Liver
42	chr10:99122400-99158800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:99122600-99134200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr10:99122600-99134200	Strong transcription	Brain Hippocampus Middle	brain
45	chr10:99122600-99134800	Strong transcription	Stomach Smooth Muscle	stomach
46	chr10:99122800-99134200	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr10:99122800-99159200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:99123000-99134000	Strong transcription	Esophagus	oesophagus
49	chr10:99123000-99134800	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr10:99123000-99138800	Strong transcription	Duodenum Mucosa	Duodenum

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