Variant report

Variant	rs7074639
Chromosome Location	chr10:99140278-99140279
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11189151	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189169	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189171	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189205	1.00[EUR][1000 genomes]
rs11814749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12248859	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12250066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12256733	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12257067	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12269603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61731893	1.00[EUR][1000 genomes]
rs6584124	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs915197	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9663668	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv831952	chr10:98998344-99145924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv467437	chr10:99115683-99167436	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv552023	chr10:99115683-99167436	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv467438	chr10:99126249-99173870	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv552024	chr10:99126249-99173870	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv467440	chr10:99134784-99204791	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv552025	chr10:99134784-99204791	Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99109000-99157800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:99109600-99157800	Strong transcription	Fetal Stomach	stomach
3	chr10:99111600-99141800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:99113400-99158600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:99113800-99158800	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr10:99113800-99159800	Weak transcription	Fetal Brain Male	brain
7	chr10:99114600-99159000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:99115200-99145800	Strong transcription	H9 Cell Line	embryonic stem cell
9	chr10:99115200-99146800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:99115400-99157600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:99115600-99141600	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:99115600-99159800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:99115800-99157800	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:99115800-99157800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:99115800-99158600	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr10:99118000-99159800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:99121000-99157600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:99121000-99159600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr10:99121200-99159600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:99122000-99141600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:99122400-99144000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr10:99122400-99145800	Strong transcription	Liver	Liver
23	chr10:99122400-99158800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:99122800-99159200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:99125800-99150400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr10:99127000-99157600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:99127400-99157600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:99127800-99157600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:99128200-99141800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:99128200-99156600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:99128400-99141200	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr10:99128400-99142400	Strong transcription	Primary B cells from peripheral blood	blood
33	chr10:99128400-99142400	Strong transcription	NH-A	brain
34	chr10:99128400-99151000	Strong transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:99128400-99159800	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr10:99129600-99159200	Strong transcription	Osteobl	bone
37	chr10:99130800-99159600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr10:99131600-99158400	Strong transcription	Fetal Muscle Trunk	muscle
39	chr10:99132000-99157600	Strong transcription	Fetal Muscle Leg	muscle
40	chr10:99132200-99147800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr10:99132200-99149800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr10:99132600-99147600	Weak transcription	NHDF-Ad	bronchial
43	chr10:99132600-99149200	Weak transcription	Fetal Kidney	kidney
44	chr10:99133200-99142800	Weak transcription	Small Intestine	intestine
45	chr10:99133600-99140400	Weak transcription	Psoas Muscle	Psoas
46	chr10:99133800-99147800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr10:99134000-99145200	Weak transcription	Colon Smooth Muscle	Colon
48	chr10:99134200-99147800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr10:99134800-99140800	Weak transcription	Fetal Lung	lung
50	chr10:99135800-99141800	Strong transcription	Pancreas	Pancrea

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