Variant report

Variant	rs11189240
Chromosome Location	chr10:99256912-99256913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr10:99256802-99256950	K562	blood:	n/a	n/a
2	POLR2A	chr10:99256745-99256993	HepG2	liver:	n/a	n/a
3	WRNIP1	chr10:99256873-99257004	GM12878	blood:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99256769..99258998-chr15:71406274..71408704,2	MCF-7	breast:
2	chr10:99205729..99207747-chr10:99256104..99259230,4	MCF-7	breast:
3	chr10:99184102..99187983-chr10:99256299..99259028,4	MCF-7	breast:
4	chr10:99226678..99229676-chr10:99256675..99258497,3	K562	blood:
5	chr10:99256761..99259494-chr10:99495841..99497583,3	K562	blood:
6	chr10:99255590..99258774-chr10:99331777..99334688,4	MCF-7	breast:
7	chr10:99255036..99258001-chr10:99391751..99393858,2	K562	blood:
8	chr10:99256903..99258777-chr10:99359333..99362265,3	MCF-7	breast:
9	chr10:99204416..99207741-chr10:99255231..99259773,5	K562	blood:
10	chr10:99186982..99190152-chr10:99256815..99259689,3	K562	blood:
11	chr10:99256533..99260506-chr10:99329939..99335950,10	MCF-7	breast:
12	chr10:99230735..99233202-chr10:99255020..99257889,3	MCF-7	breast:

No data

Variant related genes	Relation type
UBTD1	TF binding region
ENSG00000171314	Chromatin interaction
ENSG00000155229	Chromatin interaction
ENSG00000171311	Chromatin interaction
ENSG00000171307	Chromatin interaction
ENSG00000224474	Chromatin interaction
ENSG00000241935	Chromatin interaction
ENSG00000225362	Chromatin interaction
ENSG00000155256	Chromatin interaction
ENSG00000165887	Chromatin interaction
ENSG00000171160	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10786349	0.82[EUR][1000 genomes]
rs10882938	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882941	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882942	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12412017	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2007349	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2152092	0.81[EUR][1000 genomes]
rs2211243	0.93[ASN][1000 genomes]
rs2236575	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3740526	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3750558	0.89[ASN][1000 genomes]
rs3818909	0.82[EUR][1000 genomes]
rs4917773	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7068965	0.93[ASN][1000 genomes]
rs7093946	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7897727	0.84[EUR][1000 genomes]
rs7923913	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99239400-99257400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:99240800-99257400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:99244200-99257200	Weak transcription	Placenta	Placenta
4	chr10:99250800-99257400	Weak transcription	Ovary	ovary
5	chr10:99252200-99257200	Enhancers	Brain Cingulate Gyrus	brain
6	chr10:99253000-99257000	Enhancers	Brain Anterior Caudate	brain
7	chr10:99253000-99257200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr10:99253000-99257200	Enhancers	Right Atrium	heart
9	chr10:99253200-99257200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr10:99253400-99257000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:99253400-99257200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:99253400-99257200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:99253600-99257000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr10:99253600-99257200	Enhancers	Fetal Heart	heart
15	chr10:99253800-99257200	Enhancers	Primary T cells fromperipheralblood	blood
16	chr10:99253800-99257200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:99254200-99257200	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr10:99254400-99257200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr10:99254400-99257400	Enhancers	Fetal Lung	lung
20	chr10:99254600-99257400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:99254800-99257200	Enhancers	Primary B cells from peripheral blood	blood
22	chr10:99254800-99257200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr10:99255000-99257000	Enhancers	Stomach Smooth Muscle	stomach
24	chr10:99255000-99257400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr10:99255000-99257400	Weak transcription	Spleen	Spleen
26	chr10:99255200-99257200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr10:99255200-99257200	Weak transcription	Right Ventricle	heart
28	chr10:99255200-99257400	Weak transcription	Stomach Mucosa	stomach
29	chr10:99255400-99257200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:99255400-99257200	Enhancers	Thymus	Thymus
31	chr10:99255600-99257000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr10:99255600-99257200	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr10:99255800-99257400	Enhancers	Colon Smooth Muscle	Colon
34	chr10:99255800-99257400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:99256000-99257000	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr10:99256000-99257000	Flanking Active TSS	GM12878-XiMat	blood
37	chr10:99256000-99257200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:99256000-99257400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:99256200-99257200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:99256200-99257400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr10:99256200-99257400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr10:99256200-99257400	Weak transcription	Esophagus	oesophagus
43	chr10:99256200-99257400	Weak transcription	Gastric	stomach
44	chr10:99256200-99257400	Weak transcription	Left Ventricle	heart
45	chr10:99256200-99257400	Weak transcription	Pancreas	Pancrea
46	chr10:99256400-99257000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:99256400-99257000	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr10:99256400-99257200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:99256400-99257400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
50	chr10:99256400-99259400	Active TSS	K562	blood

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