Variant report

Variant	rs12412017
Chromosome Location	chr10:99234238-99234239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99233786..99237175-chr10:99256674..99259199,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155229	Chromatin interaction
ENSG00000165886	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10786349	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10882938	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882941	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882942	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11189240	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2007349	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2152092	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2211243	0.95[ASN][1000 genomes]
rs2236575	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3740526	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3750558	0.91[ASN][1000 genomes]
rs3818909	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4917773	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7068965	0.95[ASN][1000 genomes]
rs7093946	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7897727	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7923913	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99210000-99243800	Strong transcription	Primary T cells from cord blood	blood
2	chr10:99210000-99243800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr10:99210000-99244000	Strong transcription	Fetal Stomach	stomach
4	chr10:99210000-99244200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:99210200-99243800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:99210400-99243600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr10:99210400-99244800	Strong transcription	Fetal Thymus	thymus
8	chr10:99210600-99234600	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr10:99210600-99238800	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:99210600-99239000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:99210600-99241800	Strong transcription	Thymus	Thymus
12	chr10:99210600-99243800	Strong transcription	Duodenum Mucosa	Duodenum
13	chr10:99210600-99244200	Strong transcription	Placenta	Placenta
14	chr10:99210800-99239000	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:99210800-99243800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:99210800-99244000	Strong transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:99210800-99246000	Strong transcription	Primary B cells from peripheral blood	blood
18	chr10:99211000-99238800	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:99211000-99243800	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr10:99211000-99246400	Strong transcription	Dnd41	blood
21	chr10:99211200-99244800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr10:99211200-99246200	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr10:99211200-99246600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:99211400-99239000	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr10:99211400-99241600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr10:99211600-99239000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr10:99211800-99241200	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr10:99214000-99235600	Strong transcription	Brain Inferior Temporal Lobe	brain
29	chr10:99214200-99234400	Strong transcription	Lung	lung
30	chr10:99214400-99242000	Strong transcription	Fetal Muscle Trunk	muscle
31	chr10:99214400-99246400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr10:99214600-99242800	Strong transcription	Fetal Muscle Leg	muscle
33	chr10:99214600-99243800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr10:99214600-99243800	Strong transcription	Stomach Smooth Muscle	stomach
35	chr10:99214800-99243800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:99215000-99234600	Strong transcription	Colon Smooth Muscle	Colon
37	chr10:99215000-99238000	Strong transcription	Fetal Lung	lung
38	chr10:99215200-99242400	Strong transcription	Left Ventricle	heart
39	chr10:99215200-99243800	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr10:99215400-99243800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr10:99215400-99254600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr10:99215800-99235200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:99216800-99243800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:99217200-99237200	Weak transcription	Fetal Heart	heart
45	chr10:99217800-99242000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
46	chr10:99218200-99244000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr10:99222000-99236000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:99223800-99235600	Strong transcription	Brain Hippocampus Middle	brain
49	chr10:99224000-99235000	Strong transcription	Osteobl	bone
50	chr10:99224200-99234400	Strong transcription	Primary neutrophils fromperipheralblood	blood

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