Variant report

Variant	rs4917773
Chromosome Location	chr10:99249929-99249930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99248992..99255448-chr10:99256116..99258644,11	K562	blood:
2	chr10:99248310..99253998-chr10:99255944..99258497,7	MCF-7	breast:
3	chr10:99249819..99251861-chr10:99254679..99256807,3	MCF-7	breast:
4	chr10:99248971..99251809-chr10:99252643..99255193,3	K562	blood:

Variant related genes	Relation type
ENSG00000165886	Chromatin interaction
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10786349	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882938	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882941	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882942	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11189240	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12412017	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2007349	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2152092	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2211243	0.85[ASN][1000 genomes]
rs2236575	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3740526	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3750558	0.83[ASN][1000 genomes]
rs3818909	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7068965	0.85[ASN][1000 genomes]
rs7093946	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7897727	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7923913	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99215400-99254600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:99230800-99250400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:99237200-99254800	Weak transcription	Small Intestine	intestine
4	chr10:99238000-99250200	Weak transcription	Fetal Brain Male	brain
5	chr10:99239200-99254600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:99239400-99257400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:99239600-99250400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:99240800-99254600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:99240800-99256000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:99240800-99257400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:99241000-99250200	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:99241000-99250600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr10:99241000-99254600	Weak transcription	K562	blood
14	chr10:99241200-99250000	Weak transcription	HSMMtube	muscle
15	chr10:99241200-99250400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr10:99241200-99250400	Weak transcription	Fetal Lung	lung
17	chr10:99241200-99250400	Weak transcription	Gastric	stomach
18	chr10:99241200-99250400	Weak transcription	Ovary	ovary
19	chr10:99241200-99253600	Weak transcription	Fetal Kidney	kidney
20	chr10:99241200-99254600	Weak transcription	Esophagus	oesophagus
21	chr10:99241200-99254800	Weak transcription	Stomach Mucosa	stomach
22	chr10:99241200-99256800	Weak transcription	Colonic Mucosa	Colon
23	chr10:99241200-99256800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr10:99241400-99250400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:99241400-99250400	Weak transcription	Aorta	Aorta
26	chr10:99241400-99254200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:99241800-99252800	Weak transcription	Lung	lung
28	chr10:99241800-99256400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr10:99242000-99250400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr10:99242200-99250200	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr10:99242200-99252600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:99242400-99250200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr10:99243600-99250200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr10:99243600-99250600	Weak transcription	Liver	Liver
35	chr10:99243800-99250000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr10:99243800-99250200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:99243800-99250200	Weak transcription	Adipose Nuclei	Adipose
38	chr10:99243800-99250200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr10:99243800-99250200	Weak transcription	HSMM	muscle
40	chr10:99243800-99250400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr10:99243800-99250400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr10:99243800-99250400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:99243800-99250400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:99243800-99250400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr10:99243800-99250400	Weak transcription	Pancreas	Pancrea
46	chr10:99243800-99250400	Weak transcription	Right Atrium	heart
47	chr10:99243800-99250600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr10:99243800-99250600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr10:99243800-99251000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr10:99243800-99253000	Weak transcription	NH-A	brain

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