Variant report

Variant	rs1119120
Chromosome Location	chr4:160584780-160584781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10019246	1.00[ASN][1000 genomes]
rs10024499	1.00[ASN][1000 genomes]
rs1117139	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1502751	1.00[ASN][1000 genomes]
rs1502752	1.00[ASN][1000 genomes]
rs1502753	1.00[ASN][1000 genomes]
rs1827464	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1847200	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2202201	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2348415	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4323062	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4690954	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4691580	0.87[ASN][1000 genomes]
rs4691583	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4691592	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62337306	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6845535	1.00[ASN][1000 genomes]
rs6852879	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7654312	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7655576	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7661734	0.84[AFR][1000 genomes]
rs990180	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv881205	chr4:160516090-160628006	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2755953	chr4:160557413-160626250	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv595813	chr4:160574450-160665365	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160584000-160584800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:160584200-160584800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:160584600-160585000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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