Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10019246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10024499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1117139	1.00[ASN][1000 genomes]
rs1119120	1.00[ASN][1000 genomes]
rs1393574	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1502752	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1502753	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1827464	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1847200	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2202201	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2348415	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4323062	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4690954	1.00[ASN][1000 genomes]
rs4691580	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4691583	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4691592	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62337306	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6845535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6852879	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7654312	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7655576	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs990180	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv881205	chr4:160516090-160628006	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2755953	chr4:160557413-160626250	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv595813	chr4:160574450-160665365	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160576200-160578000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160576400-160577600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr4:160576600-160582200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search: