Variant report
| Variant | rs6852879 |
|---|---|
| Chromosome Location | chr4:160535868-160535869 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10019246 | 0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10024499 | 0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1117139 | 0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1119120 | 0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1393574 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1502751 | 0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1502752 | 0.90[ASN][1000 genomes] |
| rs1502753 | 0.90[ASN][1000 genomes] |
| rs1827464 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1847200 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2202201 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2348415 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4323062 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4690954 | 0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4691580 | 0.96[ASN][1000 genomes] |
| rs4691583 | 0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4691592 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62337306 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6845535 | 0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7654312 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7655576 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs990180 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015469 | chr4:160389277-160841619 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv537316 | chr4:160389277-160841619 | Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv881205 | chr4:160516090-160628006 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:160527400-160536400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 2 | chr4:160535800-160536800 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
