Variant report

Variant	rs11194351
Chromosome Location	chr10:110779034-110779035
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:110778371..110779098-chr10:111625911..111626776,3	MCF-7	breast:
2	chr10:110778372..110779316-chr10:111186907..111187555,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11194350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194357	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194358	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194359	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194360	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194361	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194375	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194376	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194377	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194387	1.00[AMR][1000 genomes]
rs11194390	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194398	1.00[AMR][1000 genomes]
rs12241065	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241218	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12242168	1.00[AMR][1000 genomes]
rs12243514	1.00[AMR][1000 genomes]
rs12245283	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250675	1.00[AMR][1000 genomes]
rs12250682	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251125	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251602	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253046	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253337	1.00[AMR][1000 genomes]
rs12254763	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12256587	1.00[AMR][1000 genomes]
rs12258896	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12264452	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12264957	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28771205	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58755187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60538078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60992446	1.00[AMR][1000 genomes]
rs7091244	1.00[AMR][1000 genomes]
rs73342418	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342447	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342450	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342454	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342455	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342457	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342460	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342462	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73344572	1.00[AMR][1000 genomes]
rs73354851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354870	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050244	chr10:110279647-110779693	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv917125	chr10:110425573-111119776	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv492162	chr10:110440656-111089721	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1067661	chr10:110440715-111089466	Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv529130	chr10:110440715-111089466	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv2750851	chr10:110503788-110905211	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv895993	chr10:110639267-110814528	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv895994	chr10:110702426-110982703	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv895995	chr10:110702426-111348202	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv895996	chr10:110739765-110991026	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1048918	chr10:110757671-110823083	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv895997	chr10:110761477-110863795	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110778400-110779200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:110778400-110779400	Enhancers	Adipose Nuclei	Adipose
3	chr10:110779000-110779400	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links